Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FH486_RS12125 Genome accession   NZ_CP040907
Coordinates   2210154..2210666 (+) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain FB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2205154..2215666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH486_RS12115 gyrA 2207098..2209569 (+) 2472 WP_002325156.1 DNA gyrase subunit A -
  FH486_RS12120 rpsF 2209805..2210104 (+) 300 WP_002288366.1 30S ribosomal protein S6 -
  FH486_RS12125 ssb 2210154..2210666 (+) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  FH486_RS12130 rpsR 2210692..2210928 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  FH486_RS12135 - 2211071..2213044 (+) 1974 WP_002288371.1 DHH family phosphoesterase -
  FH486_RS12140 rplI 2213050..2213502 (+) 453 WP_002288372.1 50S ribosomal protein L9 -
  FH486_RS12145 dnaB 2213776..2215143 (+) 1368 WP_002288373.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=368213 FH486_RS12125 WP_002288368.1 2210154..2210666(+) (ssb) [Enterococcus faecium strain FB-1]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=368213 FH486_RS12125 WP_002288368.1 2210154..2210666(+) (ssb) [Enterococcus faecium strain FB-1]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment