Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GZS09_RS19135 | Genome accession | NZ_CP048359 |
| Coordinates | 3988891..3989331 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360902.1 | Uniprot ID | A7ZHJ7 |
| Organism | Escherichia coli strain 53 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3983891..3994331
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZS09_RS19115 (GZS09_19115) | aroP | 3984889..3986262 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| GZS09_RS19120 (GZS09_19120) | ampE | 3986305..3987159 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| GZS09_RS19125 (GZS09_19125) | ampD | 3987156..3987707 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GZS09_RS19130 (GZS09_19130) | nadC | 3987795..3988688 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GZS09_RS19135 (GZS09_19135) | pilA | 3988891..3989331 (+) | 441 | WP_000360902.1 | prepilin peptidase-dependent pilin | Machinery gene |
| GZS09_RS19140 (GZS09_19140) | pilB | 3989341..3990726 (+) | 1386 | WP_001025155.1 | type II secretion system protein GspE | Machinery gene |
| GZS09_RS19145 (GZS09_19145) | hofC | 3990716..3991918 (+) | 1203 | WP_162647485.1 | protein transport protein HofC | - |
| GZS09_RS19150 (GZS09_19150) | guaC | 3991953..3992996 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| GZS09_RS25660 | - | 3993152..3993196 (-) | 45 | WP_120795372.1 | protein YacM | - |
| GZS09_RS19155 (GZS09_19155) | coaE | 3993221..3993841 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15630.76 Da Isoelectric Point: 4.5559
>NTDB_id=368213 GZS09_RS19135 WP_000360902.1 3988891..3989331(+) (pilA) [Escherichia coli strain 53]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALHQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALHQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=368213 GZS09_RS19135 WP_000360902.1 3988891..3989331(+) (pilA) [Escherichia coli strain 53]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCATC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCATC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
41.791 |
91.781 |
0.384 |
| pilA | Haemophilus influenzae Rd KW20 |
41.045 |
91.781 |
0.377 |