Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FHP28_RS05815 Genome accession   NZ_CP040878
Coordinates   965026..965538 (-) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain HB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 960026..970538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP28_RS05795 dnaB 960548..961915 (-) 1368 WP_002288373.1 replicative DNA helicase -
  FHP28_RS05800 rplI 962190..962642 (-) 453 WP_002293132.1 50S ribosomal protein L9 -
  FHP28_RS05805 - 962648..964621 (-) 1974 WP_002319563.1 DHH family phosphoesterase -
  FHP28_RS05810 rpsR 964764..965000 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  FHP28_RS05815 ssb 965026..965538 (-) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  FHP28_RS05820 rpsF 965588..965887 (-) 300 WP_002293129.1 30S ribosomal protein S6 -
  FHP28_RS05825 gyrA 966123..968594 (-) 2472 WP_002293127.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=367823 FHP28_RS05815 WP_002288368.1 965026..965538(-) (ssb) [Enterococcus faecium strain HB-1]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=367823 FHP28_RS05815 WP_002288368.1 965026..965538(-) (ssb) [Enterococcus faecium strain HB-1]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTAACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment