Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FHJ99_RS02880 | Genome accession | NZ_CP040875 |
| Coordinates | 491385..491897 (+) | Length | 170 a.a. |
| NCBI ID | WP_002288368.1 | Uniprot ID | - |
| Organism | Enterococcus faecium strain DB-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 486385..496897
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FHJ99_RS02870 (FHJ99_02870) | gyrA | 488329..490800 (+) | 2472 | WP_002325156.1 | DNA gyrase subunit A | - |
| FHJ99_RS02875 (FHJ99_02875) | rpsF | 491036..491335 (+) | 300 | WP_002288366.1 | 30S ribosomal protein S6 | - |
| FHJ99_RS02880 (FHJ99_02880) | ssb | 491385..491897 (+) | 513 | WP_002288368.1 | single-stranded DNA-binding protein | Machinery gene |
| FHJ99_RS02885 (FHJ99_02885) | rpsR | 491923..492159 (+) | 237 | WP_002288370.1 | 30S ribosomal protein S18 | - |
| FHJ99_RS02890 (FHJ99_02890) | - | 492302..494275 (+) | 1974 | WP_002288371.1 | DHH family phosphoesterase | - |
| FHJ99_RS02895 (FHJ99_02895) | rplI | 494281..494733 (+) | 453 | WP_002288372.1 | 50S ribosomal protein L9 | - |
| FHJ99_RS02900 (FHJ99_02900) | dnaB | 495007..496374 (+) | 1368 | WP_002288373.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18451.99 Da Isoelectric Point: 4.6742
>NTDB_id=367784 FHJ99_RS02880 WP_002288368.1 491385..491897(+) (ssb) [Enterococcus faecium strain DB-1]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=367784 FHJ99_RS02880 WP_002288368.1 491385..491897(+) (ssb) [Enterococcus faecium strain DB-1]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.322 |
100 |
0.618 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.983 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.264 |
62.353 |
0.388 |