Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FEE40_RS03075 Genome accession   NZ_CP040852
Coordinates   637785..638339 (+) Length   184 a.a.
NCBI ID   WP_076149724.1    Uniprot ID   A0AAE7BPJ2
Organism   Ligilactobacillus murinus strain V10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 632785..643339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE40_RS03060 (FEE40_03055) gyrA 633923..636385 (+) 2463 WP_004049705.1 DNA gyrase subunit A -
  FEE40_RS03065 (FEE40_03060) - 636482..637117 (-) 636 WP_163587786.1 NAD(P)H-binding protein -
  FEE40_RS03070 (FEE40_03065) rpsF 637458..637748 (+) 291 WP_004049701.1 30S ribosomal protein S6 -
  FEE40_RS03075 (FEE40_03070) ssb 637785..638339 (+) 555 WP_076149724.1 single-stranded DNA-binding protein Machinery gene
  FEE40_RS03080 (FEE40_03075) rpsR 638361..638597 (+) 237 WP_003695889.1 30S ribosomal protein S18 -
  FEE40_RS03085 (FEE40_03080) - 639176..639706 (-) 531 WP_163587787.1 hypothetical protein -
  FEE40_RS03090 (FEE40_03085) - 639867..640073 (+) 207 WP_004049696.1 hypothetical protein -
  FEE40_RS03095 (FEE40_03090) - 640382..641344 (+) 963 WP_163592338.1 IS30 family transposase -
  FEE40_RS03100 (FEE40_03095) - 641483..641803 (+) 321 Protein_630 cysteine peptidase family C39 domain-containing protein -
  FEE40_RS03105 (FEE40_03100) - 641883..642641 (+) 759 WP_163587934.1 LytTR family DNA-binding domain-containing protein -
  FEE40_RS03110 (FEE40_03105) - 642818..642949 (+) 132 WP_153551905.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  FEE40_RS03115 - 642968..643141 (+) 174 WP_153551904.1 hypothetical protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20074.81 Da        Isoelectric Point: 4.6382

>NTDB_id=367620 FEE40_RS03075 WP_076149724.1 637785..638339(+) (ssb) [Ligilactobacillus murinus strain V10]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGSSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGSGFDTTPN
NSNNAADPFAGGQQIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=367620 FEE40_RS03075 WP_076149724.1 637785..638339(+) (ssb) [Ligilactobacillus murinus strain V10]
TTGATCAATTCAGTTGTTCTAGTAGGTCGCTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGTGTAATGT
GGCGTAAAGCAGCCGAAAACTTCGCTAATTTTACCCACAAAGGTTCCTTAGTAGGGATCGAAGGCCGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAGCAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACAAATGATGCTTTTGGTGGTAGTGGTTTTGATACCACTCCAAAC
AATAGTAACAATGCGGCTGATCCATTTGCCGGTGGGCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.622

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.15

100

0.571

Multiple sequence alignment