Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NHAL_RS02935 Genome accession   NC_013960
Coordinates   611408..612742 (+) Length   444 a.a.
NCBI ID   WP_013031677.1    Uniprot ID   -
Organism   Nitrosococcus halophilus Nc 4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 606408..617742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHAL_RS02915 (Nhal_0594) suhB 606619..607416 (+) 798 WP_013031673.1 inositol-1-monophosphatase -
  NHAL_RS02920 (Nhal_0595) typA 607738..609567 (+) 1830 WP_013031674.1 translational GTPase TypA -
  NHAL_RS22200 (Nhal_0596) - 609572..609799 (+) 228 WP_013031675.1 PP0621 family protein -
  NHAL_RS02930 (Nhal_0597) - 609744..611411 (+) 1668 WP_013031676.1 sensor histidine kinase -
  NHAL_RS02935 (Nhal_0598) pilR 611408..612742 (+) 1335 WP_013031677.1 sigma-54-dependent transcriptional regulator Regulator
  NHAL_RS02940 (Nhal_0599) - 612890..613300 (+) 411 WP_083761352.1 transposase -
  NHAL_RS20110 (Nhal_0600) - 613365..613523 (+) 159 WP_013031679.1 type II toxin-antitoxin system RelE family toxin -
  NHAL_RS02950 (Nhal_0601) - 613570..614133 (+) 564 WP_013031680.1 Uma2 family endonuclease -
  NHAL_RS02955 (Nhal_0602) - 614319..614648 (+) 330 WP_013031681.1 DUF4258 domain-containing protein -
  NHAL_RS02960 (Nhal_0603) - 614709..615164 (+) 456 WP_203434353.1 helix-turn-helix domain-containing protein -
  NHAL_RS02965 (Nhal_0604) - 615201..615467 (+) 267 WP_013031683.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  NHAL_RS02970 (Nhal_0605) - 615485..615703 (+) 219 WP_238985421.1 hypothetical protein -
  NHAL_RS02975 (Nhal_0606) - 615715..616098 (-) 384 WP_013031685.1 helix-turn-helix transcriptional regulator -
  NHAL_RS02980 (Nhal_0607) - 616095..616352 (-) 258 WP_013031686.1 type II toxin-antitoxin system RelE family toxin -
  NHAL_RS02985 (Nhal_0608) - 616719..617210 (+) 492 WP_013031687.1 pilin -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 49177.92 Da        Isoelectric Point: 6.7717

>NTDB_id=36755 NHAL_RS02935 WP_013031677.1 611408..612742(+) (pilR) [Nitrosococcus halophilus Nc 4]
MKEHPLALIVDDEPDILELLELTLAPMGVACHKAVDLAEARQYLQQHSFDLCLTDMRLPDGDGIELVRLISQHFPETPVA
VITAHGSVETAVEALKSGAFDFISKPVDLQALRNLTNAALRLPLRYPQRERRTRYRLLGESAAMRAVRSKIAKLARSQAP
VYISGESGTGKELVARLIHEQGPRLEAPFVPVNCGAIPNELMESEFFGHKKGSFTGATHDKRGLFQTAGGGTLFLDEVAD
LPLPMQVKLLRAIQEKSVRPIGSEKEISVDVRILCATHKDLAALVKEGSFRQDLFYRLNVIELPVPPLRQRASDIPQLAE
HILSKLAGINQITCPKLTSDALEALQVYPFPGNVRELENTLERAMTLCDSEIIEAKDLHLPKAEPPSTPTSLPVGSLEEC
LEGVERRAILQALERTHYNKTAAAKLLGITFRALRYRLKKLELE

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=36755 NHAL_RS02935 WP_013031677.1 611408..612742(+) (pilR) [Nitrosococcus halophilus Nc 4]
ATGAAAGAACATCCCTTGGCCCTCATTGTGGACGATGAGCCGGATATTCTAGAGTTACTTGAGCTTACCCTGGCGCCTAT
GGGCGTGGCTTGTCATAAGGCTGTCGATCTTGCCGAAGCCCGCCAATATTTGCAGCAGCATTCCTTCGATCTGTGCTTGA
CCGATATGCGCCTTCCGGATGGGGATGGTATTGAGTTGGTCAGGCTCATTAGCCAGCATTTCCCGGAGACACCGGTCGCG
GTGATTACGGCCCATGGCAGTGTGGAGACCGCGGTTGAAGCCCTGAAGTCGGGCGCTTTTGATTTTATCTCCAAACCGGT
GGATTTGCAGGCGCTTCGCAATCTGACCAACGCAGCCCTTAGACTCCCGCTTCGTTATCCCCAAAGGGAGCGGCGGACCC
GCTACCGGTTACTGGGAGAATCAGCCGCCATGCGGGCGGTACGCTCCAAAATCGCCAAGCTGGCACGGAGCCAAGCGCCG
GTCTACATTAGCGGTGAATCGGGCACCGGCAAGGAGCTGGTCGCCAGGCTCATCCATGAGCAAGGGCCCCGCTTGGAAGC
GCCCTTTGTCCCGGTAAACTGTGGCGCTATCCCCAATGAGTTGATGGAAAGCGAGTTTTTCGGCCATAAAAAGGGCAGTT
TTACCGGCGCCACCCATGATAAGCGAGGGCTGTTTCAAACCGCCGGTGGAGGGACCCTGTTTTTGGATGAAGTGGCCGAC
TTACCTTTACCCATGCAGGTCAAACTTTTGCGGGCTATCCAGGAGAAAAGCGTGCGGCCTATTGGCAGCGAGAAAGAAAT
TTCCGTGGATGTGCGTATTCTCTGTGCTACCCACAAGGACTTAGCCGCCTTAGTAAAGGAAGGCAGCTTCCGCCAGGATC
TCTTCTACCGGCTTAATGTTATTGAGTTGCCGGTTCCGCCCTTAAGACAACGGGCCAGTGATATTCCCCAGTTGGCCGAG
CATATTTTGAGTAAACTCGCCGGGATTAACCAAATCACTTGTCCTAAGTTGACTTCTGACGCCCTGGAGGCGCTACAAGT
TTACCCTTTCCCAGGGAATGTCCGCGAGTTGGAAAACACCCTCGAGCGGGCCATGACCTTGTGTGACTCCGAGATCATAG
AGGCCAAAGATTTGCACTTGCCTAAGGCGGAACCCCCCAGTACCCCGACATCACTGCCGGTAGGTTCGTTAGAAGAGTGT
TTGGAGGGCGTGGAAAGGCGGGCCATTCTCCAGGCTTTGGAACGAACCCATTACAACAAGACCGCTGCCGCCAAGCTCCT
TGGCATTACCTTCCGGGCTTTGCGTTATCGTTTAAAAAAACTGGAGTTGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(401-441)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(137-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

65.385

99.55

0.651
  pilR Acinetobacter baumannii strain A118

49.571

100

0.52
  luxO Vibrio cholerae strain A1552

36.913

100

0.372

Multiple sequence alignment