Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   GYN05_RS02330 Genome accession   NZ_CP048250
Coordinates   450280..450753 (+) Length   157 a.a.
NCBI ID   WP_250328999.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT532     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445280..455753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN05_RS02305 (GYN05_02295) dnaB 445707..447113 (+) 1407 WP_123768188.1 replicative DNA helicase -
  GYN05_RS02310 (GYN05_02300) pilH 447421..448086 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GYN05_RS02315 (GYN05_02305) pilV 448118..448729 (+) 612 WP_123768187.1 type IV pilus modification protein PilV Regulator
  GYN05_RS02320 (GYN05_02310) pilJ 448726..449688 (+) 963 WP_123768186.1 PilW family protein Machinery gene
  GYN05_RS02325 (GYN05_02315) pilK 449667..450278 (+) 612 WP_250328978.1 pilus assembly protein Machinery gene
  GYN05_RS02330 (GYN05_02320) pilL 450280..450753 (+) 474 WP_250328999.1 PilX family type IV pilin Machinery gene
  GYN05_RS02335 (GYN05_02325) - 450823..451131 (-) 309 WP_050161303.1 AzlD family protein -
  GYN05_RS02340 (GYN05_02330) - 451128..451839 (-) 712 Protein_459 AzlC family ABC transporter permease -
  GYN05_RS02345 (GYN05_02335) dut 452005..452457 (+) 453 WP_010359930.1 dUTP diphosphatase -
  GYN05_RS02350 (GYN05_02340) dapC 452535..453722 (+) 1188 WP_010359932.1 succinyldiaminopimelate transaminase -
  GYN05_RS02355 (GYN05_02345) yaaA 453878..454657 (+) 780 WP_250328979.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17516.24 Da        Isoelectric Point: 9.5865

>NTDB_id=367464 GYN05_RS02330 WP_250328999.1 450280..450753(+) (pilL) [Neisseria gonorrhoeae strain CT532]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLEIFVSGYKM
NPKIAKKYSVSVRFVNEGKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRNAVSAQVYSETLSADSGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=367464 GYN05_RS02330 WP_250328999.1 450280..450753(+) (pilL) [Neisseria gonorrhoeae strain CT532]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGCGGTTTGTCAATGAGGGAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCG
TTTCTGCCCAGGTCTATTCGGAGACCTTGTCCGCAGATAGCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

93.631

100

0.936
  pilX Neisseria meningitidis 8013

85.35

100

0.854