Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   GYN05_RS02315 Genome accession   NZ_CP048250
Coordinates   448118..448729 (+) Length   203 a.a.
NCBI ID   WP_123768187.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT532     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 443118..453729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN05_RS02290 (GYN05_02280) - 443564..443896 (+) 333 WP_003687908.1 hypothetical protein -
  GYN05_RS02295 (GYN05_02285) - 444223..444732 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  GYN05_RS02300 (GYN05_02290) - 444962..445543 (-) 582 WP_033910016.1 superoxide dismutase -
  GYN05_RS02305 (GYN05_02295) dnaB 445707..447113 (+) 1407 WP_123768188.1 replicative DNA helicase -
  GYN05_RS02310 (GYN05_02300) pilH 447421..448086 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GYN05_RS02315 (GYN05_02305) pilV 448118..448729 (+) 612 WP_123768187.1 type IV pilus modification protein PilV Regulator
  GYN05_RS02320 (GYN05_02310) pilJ 448726..449688 (+) 963 WP_123768186.1 PilW family protein Machinery gene
  GYN05_RS02325 (GYN05_02315) pilK 449667..450278 (+) 612 WP_250328978.1 pilus assembly protein Machinery gene
  GYN05_RS02330 (GYN05_02320) pilL 450280..450753 (+) 474 WP_250328999.1 PilX family type IV pilin Machinery gene
  GYN05_RS02335 (GYN05_02325) - 450823..451131 (-) 309 WP_050161303.1 AzlD family protein -
  GYN05_RS02340 (GYN05_02330) - 451128..451839 (-) 712 Protein_459 AzlC family ABC transporter permease -
  GYN05_RS02345 (GYN05_02335) dut 452005..452457 (+) 453 WP_010359930.1 dUTP diphosphatase -
  GYN05_RS02350 (GYN05_02340) dapC 452535..453722 (+) 1188 WP_010359932.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22140.20 Da        Isoelectric Point: 5.0254

>NTDB_id=367461 GYN05_RS02315 WP_123768187.1 448118..448729(+) (pilV) [Neisseria gonorrhoeae strain CT532]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMRNSILSAVDGDFKVDAVKSKVQLADEQLKRFSYELKNALPDAVGIHYAVCKDSSGKEPTLSDSGVFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLEVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=367461 GYN05_RS02315 WP_123768187.1 448118..448729(+) (pilV) [Neisseria gonorrhoeae strain CT532]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGAGAAACTCTATACTATCAGCTGTGGATGGCGATTTTAAGGTTGATGCCGTGAAAAGTAAGGTGCA
GTTGGCGGATGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGTCGGTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTAAAGAGCCGACATTGTCCGACAGCGGTGTTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAG
CGGCGGCAATATCGTATATACTTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

88.889

100

0.906
  pilV/pilI Neisseria gonorrhoeae MS11

83.744

100

0.837