Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   FHI56_RS05320 Genome accession   NZ_CP040804
Coordinates   838471..839472 (+) Length   333 a.a.
NCBI ID   WP_002886078.1    Uniprot ID   A0AB37CMJ0
Organism   Streptococcus salivarius strain LAB813     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 833471..844472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS05300 (FHI56_05300) smpB 834589..835053 (+) 465 WP_002885905.1 SsrA-binding protein SmpB -
  FHI56_RS05305 (FHI56_05305) - 835200..836606 (+) 1407 WP_149561236.1 Cof-type HAD-IIB family hydrolase -
  FHI56_RS05310 (FHI56_05310) - 836608..836958 (+) 351 WP_149561237.1 S1 RNA-binding domain-containing protein -
  FHI56_RS05315 (FHI56_05315) - 837076..838158 (-) 1083 WP_002886210.1 Xaa-Pro peptidase family protein -
  FHI56_RS05320 (FHI56_05320) ccpA 838471..839472 (+) 1002 WP_002886078.1 catabolite control protein A Regulator
  FHI56_RS05325 (FHI56_05325) - 839532..840599 (+) 1068 WP_002886051.1 MmcQ/YjbR family DNA-binding protein -
  FHI56_RS05330 (FHI56_05330) - 840612..841727 (+) 1116 WP_004182927.1 glycerate kinase -
  FHI56_RS05335 (FHI56_05335) - 841767..842222 (-) 456 WP_002885945.1 YueI family protein -
  FHI56_RS05340 (FHI56_05340) eno 842429..843733 (+) 1305 WP_002886048.1 surface-displayed alpha-enolase -
  FHI56_RS05345 (FHI56_05345) - 843886..844071 (-) 186 WP_002886071.1 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36660.58 Da        Isoelectric Point: 5.4827

>NTDB_id=367349 FHI56_RS05320 WP_002886078.1 838471..839472(+) (ccpA) [Streptococcus salivarius strain LAB813]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFA
TLARGIDDIATMYKYNIVLASSDENDDHEVTVINSLFAKQVDGIIFMGYHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDSITQLAKNNEKVAFVSGPLIDDINGKLRLAGYKAGLEKNNLRYNEGLVFEAKYSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPITSYTRPNLSSINHPLYDLGAVSMRMLTKIMNKEELEEKDV
ILNHGITLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=367349 FHI56_RS05320 WP_002886078.1 838471..839472(+) (ccpA) [Streptococcus salivarius strain LAB813]
ATGAATACTGATGAAACAATTACTATATACGACGTTGCGCGTGAAGCAGGTGTTTCGATGGCGACTGTGTCTCGTGTGGT
AAATGGAAATAAAAATGTAAAAGAAAACACCCGAAAAAAAGTGCTTGAGGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAGAAAACCACTACTGTAGGAGTTGTCATCCCAAATATTGCTAATAGTTATTTTGCT
ACTTTAGCAAGGGGGATTGATGATATTGCAACCATGTACAAGTATAATATTGTTCTTGCATCTAGTGATGAAAATGACGA
TCACGAAGTTACCGTGATTAACTCTCTATTTGCCAAACAAGTAGACGGTATCATCTTCATGGGTTACCACTTGACGGAAA
AAATTCGTGCAGAATTTTCCCGTACTCGTACGCCGATTGTCCTAGCAGGAACAGTGGACCTCGAACACCAATTACCGAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTCTATAACACAGCTTGCCAAGAATAATGAAAAGGTTGCCTTTGTATC
AGGGCCACTAATTGATGATATTAATGGCAAGCTCCGTCTAGCTGGTTATAAGGCTGGACTTGAAAAGAATAATTTGCGCT
ACAATGAAGGACTAGTCTTTGAAGCTAAATATAGCTATAAAGATGGCTTTGATCTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGAGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGTAAATCAGTTCC
AGAAGACTTCGAAATCATCACAAGCAATGACTCACCAATTACAAGCTATACACGTCCAAACCTTTCTAGTATTAATCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATCATGAATAAGGAAGAACTTGAAGAAAAAGATGTT
ATTCTTAATCACGGTATTACCTTACGTCAGTCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.778

100

0.778

  ccpA Streptococcus pneumoniae D39

75.676

100

0.757

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.399

0.556


Multiple sequence alignment