Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FHI56_RS03390 Genome accession   NZ_CP040804
Coordinates   441098..441616 (+) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain LAB813     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 436098..446616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS03365 (FHI56_03365) - 437368..437757 (+) 390 WP_149561170.1 hypothetical protein -
  FHI56_RS03370 (FHI56_03370) - 437916..438707 (+) 792 WP_149561171.1 ParA family protein -
  FHI56_RS03375 (FHI56_03375) - 438792..438980 (+) 189 WP_371482609.1 hypothetical protein -
  FHI56_RS03380 (FHI56_03380) - 439048..440253 (+) 1206 WP_149561172.1 ISLre2 family transposase -
  FHI56_RS03385 (FHI56_03385) rpsF 440796..441086 (+) 291 WP_002884188.1 30S ribosomal protein S6 -
  FHI56_RS03390 (FHI56_03390) ssb 441098..441616 (+) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  FHI56_RS03395 (FHI56_03395) rpsR 441658..441897 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  FHI56_RS03400 (FHI56_03400) - 442021..442902 (-) 882 WP_004183473.1 DUF4300 family protein -
  FHI56_RS03405 (FHI56_03405) - 443013..443684 (-) 672 WP_013991182.1 DUF1129 domain-containing protein -
  FHI56_RS03410 (FHI56_03410) - 443754..444698 (-) 945 WP_013991181.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=367338 FHI56_RS03390 WP_002891844.1 441098..441616(+) (ssb) [Streptococcus salivarius strain LAB813]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=367338 FHI56_RS03390 WP_002891844.1 441098..441616(+) (ssb) [Streptococcus salivarius strain LAB813]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment