Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FDP16_RS06380 Genome accession   NZ_CP040798
Coordinates   1251511..1253472 (-) Length   653 a.a.
NCBI ID   WP_176799016.1    Uniprot ID   A0A7H8V1C9
Organism   Streptococcus sanguinis strain CGMH058     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1246511..1258472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS11720 - 1247097..1247240 (-) 144 WP_218134315.1 hypothetical protein -
  FDP16_RS06355 (FDP16_06625) - 1247253..1247783 (-) 531 WP_176799012.1 CbrC family protein -
  FDP16_RS06360 (FDP16_06630) - 1247879..1248775 (-) 897 WP_176799013.1 RluA family pseudouridine synthase -
  FDP16_RS06365 (FDP16_06635) lspA 1248759..1249226 (-) 468 WP_176799014.1 signal peptidase II -
  FDP16_RS06370 (FDP16_06640) - 1249230..1250132 (-) 903 WP_009660400.1 LysR family transcriptional regulator -
  FDP16_RS06375 (FDP16_06645) - 1250252..1251109 (-) 858 WP_176799015.1 GNAT family N-acetyltransferase -
  FDP16_RS06380 (FDP16_06655) amiA 1251511..1253472 (-) 1962 WP_176799016.1 peptide ABC transporter substrate-binding protein Regulator
  FDP16_RS06385 (FDP16_06660) - 1253758..1256556 (-) 2799 WP_176799017.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  FDP16_RS06390 (FDP16_06665) - 1256793..1257533 (+) 741 WP_176799018.1 hypothetical protein -
  FDP16_RS06395 (FDP16_06670) rpmA 1257595..1257888 (-) 294 WP_002895619.1 50S ribosomal protein L27 -
  FDP16_RS06400 (FDP16_06675) - 1257906..1258250 (-) 345 WP_176799019.1 ribosomal-processing cysteine protease Prp -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72397.10 Da        Isoelectric Point: 4.6054

>NTDB_id=367223 FDP16_RS06380 WP_176799016.1 1251511..1253472(-) (amiA) [Streptococcus sanguinis strain CGMH058]
MKASKWLIATGVALSAGLLLTACSQSSSSTNNYTYVYSSDPDSLNYLTTNRATTGDVISNLVDGLFENDKYGNLIPSIAK
SWTVSKDGLTYTYKLRDDAKWYTSDGEEYAEVKAQDFVTGLKYAADENSEAIYLVQDSVKGLDAYIKGEDKNFDNVGVKA
IDDHTLQYTLARPEPYWNSKTTSTILFPVNEEFLKAEGSNFGSVKPSSILYNGPYLLKSLTSKSVMEFVKNPNYYDKDNV
TLDSIKLTYYDGNDQEALIRNFSDGVYSTARLYPNSSGFASVKKKYADNIVYSPQDSTSYYYNFNYNRQSYNHTSKTTDA
QKSATNEAIMNKDFRQAINFAFDRTSYGAQGNGEDGATKVLRNTLVPPSFVQIGDKDFGTVVGEKLVNYGSQWQGIDLSD
AQDPYYNPEKAKAKFAEAKQALQAKGVEFPIHLDMPVDQSSTIGVQWASSIKQSIESALGAENVVIDLQKMSTDDLNNIT
YFANSAAQKDYDMSTGGWVGDYQDPSTYLDTLNIKNGGSLQNFGFEPGQDNDKIKELGLDTYTKMLEEANAETNDVQLRY
EKYAEAEAWLLDSGLIIPTVSQGATPSVTKSVPFTKAYSPVGVKGSSYNFKLTQLQKDVVTTKEYEAAKKKWKEEAAAAN
KKAQEELADHVEK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=367223 FDP16_RS06380 WP_176799016.1 1251511..1253472(-) (amiA) [Streptococcus sanguinis strain CGMH058]
ATGAAAGCATCAAAGTGGCTGATTGCGACTGGAGTTGCACTGAGTGCCGGGCTATTGCTGACGGCTTGTAGCCAGTCTTC
ATCTAGCACAAATAATTATACTTACGTTTATAGTTCAGACCCTGACAGCTTAAACTATCTTACTACAAACCGTGCAACGA
CAGGTGATGTCATTTCCAACCTGGTCGATGGGCTTTTTGAAAATGACAAGTACGGGAACCTGATTCCCTCAATCGCCAAG
TCATGGACAGTTTCTAAGGACGGTCTGACCTATACTTATAAGCTGCGTGATGATGCTAAATGGTACACATCCGATGGTGA
AGAATATGCAGAAGTAAAGGCTCAGGACTTTGTGACTGGCTTGAAGTATGCAGCAGATGAAAATTCTGAAGCTATTTATC
TCGTTCAGGACTCTGTGAAGGGCTTGGATGCTTATATCAAGGGTGAAGATAAGAATTTTGACAATGTTGGCGTCAAGGCT
ATTGATGACCATACCCTGCAATACACTCTGGCTCGCCCTGAGCCTTACTGGAACTCTAAAACGACCAGCACGATTCTTTT
CCCAGTCAATGAGGAGTTTCTGAAAGCAGAAGGAAGCAATTTTGGCTCTGTCAAGCCATCTAGCATCCTCTATAACGGTC
CTTACTTGCTTAAGTCTCTGACTTCCAAGTCTGTGATGGAATTTGTCAAAAACCCAAATTACTATGACAAAGACAATGTC
ACTCTGGATAGTATCAAGCTGACCTATTACGATGGAAATGATCAGGAAGCACTGATCCGTAACTTCAGCGATGGTGTTTA
CAGCACAGCTCGTCTCTATCCGAATAGCTCAGGCTTTGCTTCAGTCAAGAAGAAATACGCGGACAATATCGTATACAGCC
CGCAGGATTCTACTTCTTATTACTATAATTTCAACTACAACCGTCAGTCTTACAATCATACTTCTAAAACAACAGACGCT
CAAAAATCTGCTACTAACGAAGCAATCATGAACAAAGACTTCCGTCAGGCTATCAACTTTGCCTTTGATCGTACGTCTTA
TGGAGCGCAAGGGAATGGTGAAGACGGAGCGACTAAGGTCTTGAGAAATACCTTGGTACCGCCTAGCTTTGTTCAAATTG
GCGACAAGGATTTTGGAACTGTTGTTGGAGAAAAATTAGTCAACTATGGTAGCCAATGGCAAGGAATTGACCTCTCTGAC
GCTCAGGATCCTTACTACAACCCTGAAAAGGCTAAGGCGAAATTTGCAGAAGCGAAGCAAGCCTTGCAGGCCAAAGGAGT
TGAATTCCCAATTCACTTAGATATGCCAGTGGATCAGTCTAGCACGATTGGTGTTCAATGGGCTAGCTCAATCAAGCAGT
CAATCGAATCGGCTCTTGGAGCGGAAAATGTCGTGATTGACCTGCAAAAGATGAGCACAGACGATCTTAATAATATCACC
TATTTTGCTAACTCTGCTGCTCAAAAAGACTATGATATGTCTACTGGTGGCTGGGTAGGTGACTACCAAGATCCTTCTAC
TTACCTTGATACTCTTAATATCAAGAACGGTGGAAGCTTGCAAAACTTTGGTTTTGAACCAGGGCAAGACAATGATAAGA
TTAAAGAGCTAGGCTTGGATACCTATACCAAGATGCTGGAAGAAGCTAATGCTGAAACCAACGATGTGCAGCTTCGTTAC
GAAAAGTATGCAGAAGCGGAAGCTTGGTTGCTAGATAGTGGCTTGATTATCCCGACTGTATCACAAGGGGCAACACCGTC
TGTTACTAAATCAGTGCCATTTACAAAGGCCTACTCACCAGTTGGTGTCAAAGGTTCAAGCTACAACTTCAAGCTGACCC
AGCTTCAGAAGGATGTTGTAACGACCAAAGAATACGAAGCAGCTAAGAAAAAATGGAAAGAAGAAGCTGCTGCGGCAAAT
AAAAAAGCTCAGGAAGAACTTGCTGACCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8V1C9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.793

100

0.56
  amiA3 Streptococcus thermophilus LMD-9

55.403

100

0.557
  amiA3 Streptococcus thermophilus LMG 18311

55.251

100

0.556

Multiple sequence alignment