Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FG051_RS05370 | Genome accession | NZ_CP040736 |
| Coordinates | 1087234..1087734 (+) | Length | 166 a.a. |
| NCBI ID | WP_057814674.1 | Uniprot ID | A0A5B7T340 |
| Organism | Companilactobacillus futsaii strain Y97 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1074093..1126426 | 1087234..1087734 | within | 0 |
Gene organization within MGE regions
Location: 1074093..1126426
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FG051_RS05280 (FG051_05280) | galE | 1074093..1075082 (-) | 990 | WP_057814987.1 | UDP-glucose 4-epimerase GalE | - |
| FG051_RS05285 (FG051_05285) | - | 1075230..1075889 (+) | 660 | WP_083484628.1 | class A sortase | - |
| FG051_RS05290 (FG051_05290) | recJ | 1075981..1078290 (+) | 2310 | WP_057814983.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| FG051_RS05295 (FG051_05295) | - | 1078313..1078831 (+) | 519 | WP_010019526.1 | adenine phosphoribosyltransferase | - |
| FG051_RS05305 (FG051_05305) | - | 1079151..1080299 (-) | 1149 | WP_057814980.1 | tyrosine-type recombinase/integrase | - |
| FG051_RS05310 (FG051_05310) | - | 1080448..1080846 (-) | 399 | WP_057814978.1 | ImmA/IrrE family metallo-endopeptidase | - |
| FG051_RS05315 (FG051_05315) | - | 1080821..1081216 (-) | 396 | WP_057814976.1 | helix-turn-helix transcriptional regulator | - |
| FG051_RS05320 (FG051_05320) | - | 1081361..1081579 (+) | 219 | WP_057814974.1 | helix-turn-helix transcriptional regulator | - |
| FG051_RS05325 (FG051_05325) | - | 1081688..1082170 (+) | 483 | WP_057814972.1 | hypothetical protein | - |
| FG051_RS05330 (FG051_05330) | - | 1082176..1082505 (+) | 330 | WP_057814970.1 | DUF771 domain-containing protein | - |
| FG051_RS05335 (FG051_05335) | - | 1082506..1082760 (+) | 255 | WP_057814968.1 | hypothetical protein | - |
| FG051_RS05340 (FG051_05340) | - | 1082941..1083831 (+) | 891 | WP_244937291.1 | recombinase RecT | - |
| FG051_RS05345 (FG051_05345) | - | 1083812..1084615 (+) | 804 | WP_187323369.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| FG051_RS05350 (FG051_05350) | - | 1084627..1085496 (+) | 870 | WP_083484612.1 | DnaD domain protein | - |
| FG051_RS13395 | - | 1085483..1085773 (+) | 291 | WP_057814667.1 | hypothetical protein | - |
| FG051_RS13720 (FG051_05355) | - | 1085736..1085972 (+) | 237 | WP_420838809.1 | helix-turn-helix domain-containing protein | - |
| FG051_RS05360 (FG051_05360) | - | 1086069..1086500 (+) | 432 | WP_057814669.1 | RusA family crossover junction endodeoxyribonuclease | - |
| FG051_RS05365 (FG051_05365) | - | 1086497..1087234 (+) | 738 | WP_057814671.1 | Rha family transcriptional regulator | - |
| FG051_RS05370 (FG051_05370) | ssb | 1087234..1087734 (+) | 501 | WP_057814674.1 | single-stranded DNA-binding protein | Machinery gene |
| FG051_RS05375 (FG051_05375) | - | 1087944..1088153 (+) | 210 | WP_010019123.1 | hypothetical protein | - |
| FG051_RS05380 (FG051_05380) | - | 1088384..1088569 (+) | 186 | WP_010019127.1 | hypothetical protein | - |
| FG051_RS05385 (FG051_05385) | - | 1088579..1088797 (+) | 219 | WP_149029830.1 | hypothetical protein | - |
| FG051_RS13660 | - | 1088781..1088903 (+) | 123 | WP_268750941.1 | hypothetical protein | - |
| FG051_RS05390 (FG051_05390) | - | 1089110..1089331 (+) | 222 | WP_057815926.1 | hypothetical protein | - |
| FG051_RS05395 (FG051_05395) | - | 1089357..1089620 (+) | 264 | WP_057815928.1 | hypothetical protein | - |
| FG051_RS05400 (FG051_05400) | - | 1089773..1090225 (+) | 453 | WP_187323370.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| FG051_RS05405 (FG051_05405) | - | 1090547..1090810 (+) | 264 | WP_057815931.1 | DUF6275 family protein | - |
| FG051_RS05410 (FG051_05410) | - | 1091632..1092123 (+) | 492 | WP_057815933.1 | hypothetical protein | - |
| FG051_RS05415 (FG051_05415) | - | 1092071..1093420 (+) | 1350 | WP_057815935.1 | PBSX family phage terminase large subunit | - |
| FG051_RS05420 (FG051_05420) | - | 1093442..1094974 (+) | 1533 | WP_057815937.1 | phage portal protein | - |
| FG051_RS05425 (FG051_05425) | - | 1094989..1096467 (+) | 1479 | WP_244937292.1 | phage minor capsid protein | - |
| FG051_RS05430 (FG051_05430) | - | 1096469..1096669 (+) | 201 | WP_057815939.1 | hypothetical protein | - |
| FG051_RS05435 (FG051_05435) | - | 1096771..1097343 (+) | 573 | WP_057815941.1 | phage scaffolding protein | - |
| FG051_RS05440 (FG051_05440) | - | 1097366..1098253 (+) | 888 | WP_057815943.1 | hypothetical protein | - |
| FG051_RS05445 (FG051_05445) | - | 1098291..1098701 (+) | 411 | WP_222838313.1 | hypothetical protein | - |
| FG051_RS05450 (FG051_05450) | - | 1098724..1099047 (+) | 324 | WP_057816052.1 | putative minor capsid protein | - |
| FG051_RS05455 (FG051_05455) | - | 1099048..1099410 (+) | 363 | WP_235526940.1 | minor capsid protein | - |
| FG051_RS05460 (FG051_05460) | - | 1099394..1099789 (+) | 396 | WP_057815948.1 | phage tail terminator protein | - |
| FG051_RS05465 (FG051_05465) | - | 1099802..1100362 (+) | 561 | WP_057815950.1 | phage tail tube protein | - |
| FG051_RS05470 (FG051_05470) | - | 1100446..1100841 (+) | 396 | WP_057815952.1 | hypothetical protein | - |
| FG051_RS05475 (FG051_05475) | - | 1100906..1101484 (+) | 579 | WP_187323371.1 | Gp15 family bacteriophage protein | - |
| FG051_RS05480 (FG051_05480) | - | 1101517..1106358 (+) | 4842 | WP_057815955.1 | tape measure protein | - |
| FG051_RS05485 (FG051_05485) | - | 1106358..1107185 (+) | 828 | WP_057815957.1 | phage tail domain-containing protein | - |
| FG051_RS05490 (FG051_05490) | - | 1107198..1108379 (+) | 1182 | WP_057815959.1 | prophage endopeptidase tail family protein | - |
| FG051_RS05495 (FG051_05495) | - | 1108372..1109823 (+) | 1452 | WP_057815961.1 | hypothetical protein | - |
| FG051_RS05500 (FG051_05500) | - | 1109833..1110288 (+) | 456 | WP_057815963.1 | hypothetical protein | - |
| FG051_RS05505 (FG051_05505) | - | 1110288..1111727 (+) | 1440 | WP_057815965.1 | BppU family phage baseplate upper protein | - |
| FG051_RS05510 (FG051_05510) | - | 1111772..1112044 (+) | 273 | WP_057815967.1 | hypothetical protein | - |
| FG051_RS05515 (FG051_05515) | - | 1112048..1112347 (+) | 300 | WP_057815968.1 | holin | - |
| FG051_RS05520 (FG051_05520) | - | 1112365..1113360 (+) | 996 | WP_057815970.1 | peptidoglycan recognition protein family protein | - |
| FG051_RS05525 (FG051_05525) | - | 1113376..1114167 (+) | 792 | WP_057815972.1 | hypothetical protein | - |
| FG051_RS05530 (FG051_05530) | - | 1114170..1114829 (+) | 660 | WP_057815974.1 | hypothetical protein | - |
| FG051_RS05535 (FG051_05535) | - | 1114880..1116370 (-) | 1491 | WP_057815975.1 | DUF6056 family protein | - |
| FG051_RS05540 (FG051_05540) | - | 1116725..1117678 (-) | 954 | WP_083484650.1 | SAP domain-containing protein | - |
| FG051_RS05545 (FG051_05545) | - | 1117733..1117939 (-) | 207 | WP_057815980.1 | hypothetical protein | - |
| FG051_RS05550 (FG051_05550) | - | 1117976..1118470 (-) | 495 | WP_057815982.1 | hypothetical protein | - |
| FG051_RS05555 (FG051_05555) | - | 1118947..1119717 (-) | 771 | WP_057815984.1 | ion channel | - |
| FG051_RS05560 (FG051_05560) | - | 1119837..1120616 (+) | 780 | WP_057815986.1 | TraX family protein | - |
| FG051_RS05565 (FG051_05565) | - | 1120650..1122602 (+) | 1953 | WP_057815988.1 | elongation factor G | - |
| FG051_RS05570 (FG051_05570) | - | 1122558..1122848 (-) | 291 | WP_057815990.1 | hypothetical protein | - |
| FG051_RS05575 (FG051_05575) | - | 1122980..1123405 (+) | 426 | WP_057815992.1 | universal stress protein | - |
| FG051_RS05580 (FG051_05580) | - | 1123448..1123972 (-) | 525 | WP_057815994.1 | phosphatidylglycerophosphatase A | - |
| FG051_RS05585 (FG051_05585) | - | 1123989..1124645 (-) | 657 | WP_057815995.1 | HD domain-containing protein | - |
| FG051_RS05590 (FG051_05590) | - | 1124763..1125326 (+) | 564 | WP_057815997.1 | peroxiredoxin | - |
| FG051_RS05595 (FG051_05595) | pnuC | 1125677..1126426 (+) | 750 | WP_057815999.1 | nicotinamide riboside transporter PnuC | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18724.50 Da Isoelectric Point: 7.1659
>NTDB_id=366864 FG051_RS05370 WP_057814674.1 1087234..1087734(+) (ssb) [Companilactobacillus futsaii strain Y97]
MINRTVLVGRLTRDPELRYTTNGAAVASFTLAVNRQFTNSQGARETDFINCVIWRKAAENFSNFTHKGSLVGLDGRIQTR
NYENQQGQRVYVTEVVVENFSLLESRKDAENQQQNSSNTNDYSHQPPKKSRNDAVNTKSDVANSKSGDPFYNNSKPIDIS
DDDLPF
MINRTVLVGRLTRDPELRYTTNGAAVASFTLAVNRQFTNSQGARETDFINCVIWRKAAENFSNFTHKGSLVGLDGRIQTR
NYENQQGQRVYVTEVVVENFSLLESRKDAENQQQNSSNTNDYSHQPPKKSRNDAVNTKSDVANSKSGDPFYNNSKPIDIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=366864 FG051_RS05370 WP_057814674.1 1087234..1087734(+) (ssb) [Companilactobacillus futsaii strain Y97]
ATGATTAATCGAACAGTCCTAGTAGGACGCCTAACACGTGATCCAGAGTTGAGATATACAACTAATGGTGCAGCAGTAGC
AAGCTTCACACTAGCAGTAAACAGGCAATTCACTAATTCTCAAGGTGCACGTGAGACCGATTTTATCAATTGTGTCATTT
GGCGAAAAGCTGCTGAGAATTTTTCTAATTTCACTCACAAAGGTTCACTTGTAGGACTTGATGGACGAATTCAAACACGT
AACTACGAGAATCAGCAAGGACAGCGTGTATATGTCACTGAAGTAGTTGTTGAGAACTTCTCACTTTTGGAAAGTAGAAA
AGATGCAGAAAATCAGCAGCAAAATTCCAGTAATACCAACGACTACAGCCATCAACCGCCGAAAAAAAGTAGAAACGATG
CAGTAAACACAAAAAGTGATGTAGCAAATTCAAAGAGCGGTGATCCATTTTATAACAACAGCAAACCAATAGATATTTCA
GATGACGATTTACCATTTTAA
ATGATTAATCGAACAGTCCTAGTAGGACGCCTAACACGTGATCCAGAGTTGAGATATACAACTAATGGTGCAGCAGTAGC
AAGCTTCACACTAGCAGTAAACAGGCAATTCACTAATTCTCAAGGTGCACGTGAGACCGATTTTATCAATTGTGTCATTT
GGCGAAAAGCTGCTGAGAATTTTTCTAATTTCACTCACAAAGGTTCACTTGTAGGACTTGATGGACGAATTCAAACACGT
AACTACGAGAATCAGCAAGGACAGCGTGTATATGTCACTGAAGTAGTTGTTGAGAACTTCTCACTTTTGGAAAGTAGAAA
AGATGCAGAAAATCAGCAGCAAAATTCCAGTAATACCAACGACTACAGCCATCAACCGCCGAAAAAAAGTAGAAACGATG
CAGTAAACACAAAAAGTGATGTAGCAAATTCAAAGAGCGGTGATCCATTTTATAACAACAGCAAACCAATAGATATTTCA
GATGACGATTTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
64.118 |
100 |
0.657 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.14 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
63.855 |
0.361 |