Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FGY92_RS07290 Genome accession   NZ_CP040732
Coordinates   1474187..1475059 (-) Length   290 a.a.
NCBI ID   WP_019835580.1    Uniprot ID   A0A8I1BF79
Organism   Staphylococcus hominis strain S34-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1469187..1480059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGY92_RS07275 (FGY92_07325) xerC 1469617..1470510 (-) 894 WP_017174598.1 tyrosine recombinase XerC -
  FGY92_RS07280 (FGY92_07330) trmFO 1470648..1471955 (-) 1308 WP_235063112.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FGY92_RS07285 (FGY92_07335) topA 1471979..1474048 (-) 2070 WP_017174596.1 type I DNA topoisomerase -
  FGY92_RS07290 (FGY92_07340) dprA 1474187..1475059 (-) 873 WP_019835580.1 DNA-processing protein DprA Machinery gene
  FGY92_RS07295 (FGY92_07345) sucD 1475317..1476222 (-) 906 WP_037540990.1 succinate--CoA ligase subunit alpha -
  FGY92_RS07300 (FGY92_07350) sucC 1476244..1477410 (-) 1167 WP_017174593.1 ADP-forming succinate--CoA ligase subunit beta -
  FGY92_RS07305 (FGY92_07355) - 1477537..1478304 (-) 768 WP_235063113.1 ribonuclease HII -
  FGY92_RS07310 (FGY92_07360) ylqF 1478288..1479172 (-) 885 WP_235063114.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33605.64 Da        Isoelectric Point: 8.7142

>NTDB_id=366839 FGY92_RS07290 WP_019835580.1 1474187..1475059(-) (dprA) [Staphylococcus hominis strain S34-1]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHDQFEMINEWESLYLKKKRFTQLTEISYDYIQTQLSRYQVNYVTSF
SSQYPSLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATNYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=366839 FGY92_RS07290 WP_019835580.1 1474187..1475059(-) (dprA) [Staphylococcus hominis strain S34-1]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGATCAATTTGAAATGATCAATGAATGGGAATCTTTATATTTAAAAAAGAAGCGTT
TTACTCAATTAACAGAGATTTCTTACGATTATATTCAAACCCAACTTTCTAGATATCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTTCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACGTATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACAAATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTTCCAACTATTGCAGTGCTAGGTTTTGGTCATTTAAATCATTATCCAAAGGAAACACGAAAGTTACGCAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTACTGCCTGGATCAATGTTTAATCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGTTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.897

100

0.369

Multiple sequence alignment