Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GWK28_RS01980 Genome accession   NZ_CP047973
Coordinates   419908..421953 (-) Length   681 a.a.
NCBI ID   WP_005127896.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-P2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 414908..426953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK28_RS01945 (GWK28_01945) - 415392..416072 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GWK28_RS01950 (GWK28_01950) - 416099..416740 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  GWK28_RS01955 (GWK28_01955) - 416752..417039 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  GWK28_RS01960 (GWK28_01960) - 417109..418122 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  GWK28_RS01965 (GWK28_01965) - 418280..418861 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  GWK28_RS01970 (GWK28_01970) - 418876..419277 (+) 402 WP_000849701.1 NUDIX domain-containing protein -
  GWK28_RS01975 (GWK28_01975) comF 419280..419915 (-) 636 WP_000472265.1 ComF family protein Machinery gene
  GWK28_RS01980 (GWK28_01980) recG 419908..421953 (-) 2046 WP_005127896.1 ATP-dependent DNA helicase RecG Machinery gene
  GWK28_RS01985 (GWK28_01985) - 421974..422789 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  GWK28_RS01990 (GWK28_01990) adeT2 422869..423855 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  GWK28_RS01995 (GWK28_01995) plsB 423899..426472 (-) 2574 WP_005127897.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 76449.04 Da        Isoelectric Point: 7.7343

>NTDB_id=366649 GWK28_RS01980 WP_005127896.1 419908..421953(-) (recG) [Acinetobacter baumannii strain DETAB-P2]
MTSVHQLQGVGSASAALLEKLNIFTTDDLLFHLPRDYEDRSTIIPMNQLIVGRSYLLEGEVKSVDFPPGKRKSMAALIQD
EFGKVTLRFYHIYKNLTDKIKPGNRLRIFGEVRVGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQAKLREYVK
QALKHHSDALPELLPKQYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRRAYIRQIASPA
FPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAGKTLVAAVAACHALEADWQVALMAPTEILA
EQHYLNFKRWFEPLGITVAWLSGKQKGKARAHAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLAL
RNKGAEQLTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLHRIASNCREGKQAYWVCTL
VEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNELQLLIATTVIEVGVDVPNASIMVIENAER
LGLSQLHQLRGRVGRGAKASFCVLLYKPPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLE
RDDHLLSQAHYVAQQVLKDYPEQADALLKRWLPEAPRYAYV

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=366649 GWK28_RS01980 WP_005127896.1 419908..421953(-) (recG) [Acinetobacter baumannii strain DETAB-P2]
ATGACTTCAGTCCATCAGTTACAAGGCGTTGGATCGGCTTCAGCAGCCCTACTCGAAAAACTAAATATTTTTACTACAGA
TGATTTGCTGTTTCATCTGCCCCGTGATTATGAAGATCGCAGTACCATTATTCCTATGAATCAATTGATAGTTGGTCGTA
GTTATTTACTCGAGGGTGAAGTCAAATCTGTTGATTTCCCTCCAGGTAAACGTAAATCTATGGCCGCATTAATACAAGAT
GAATTTGGTAAGGTGACTTTACGCTTTTATCATATTTATAAAAATTTAACCGACAAAATAAAACCTGGTAACCGTTTACG
TATTTTTGGTGAAGTTCGTGTAGGTGCACGAGGACTTGAGCTTTATCATCCAGAAATTCAACTTATTAATGAACATACCC
CCCTTCCAAAAACGCAGCTCACAGCAATTTATCCAAGTACCGATGGACTAACACAAGCTAAATTACGCGAATATGTTAAA
CAAGCGTTGAAACATCATAGTGATGCTTTACCCGAGTTACTCCCTAAACAATATACAAATGGGTATGCACTCAAAGAAGC
TTTACATTACATTCATGAGCCGCCAGTTGATGCCAATATGATCCAACTGGCTCAAGGCTCTCATCCTGCGCAGCAACGTC
TTATTTTTGAAGAGCTGGTCGCACATCAAATTAGTCTTCTCACTCGACGTGCTTATATTCGTCAAATTGCTTCACCTGCT
TTTCCGAGTAGTAAAGTGCTTGCAAAAAAGCTGCTAGAAGCTTTACCTTTTCAAATGACCAACGCACAAAAACGTGTATC
AAAAGAAATTTTAAACGACTTAAAACAACATCAACCTATGCTGCGTTTGGTACAAGGTGATGTAGGGGCTGGAAAAACTT
TAGTTGCAGCGGTTGCAGCATGTCACGCATTAGAAGCAGATTGGCAAGTTGCGTTAATGGCACCCACCGAAATTTTAGCA
GAGCAGCATTATTTAAATTTTAAACGCTGGTTTGAACCTTTAGGTATTACGGTAGCTTGGTTGTCGGGTAAACAAAAAGG
GAAAGCGCGGGCACACGCTGAGCAACAAATTAAAGAAGGCCATGCTGAACTGATTGTGGGTACTCATGCCTTATTTCAAG
ATAACGTTGAGTTTGCAAAACTAGGACTCGTGATTATTGATGAGCAGCACCGATTCGGGGTCGATCAACGATTAGCCTTA
CGTAATAAAGGCGCCGAACAGCTCACCCCACATCAACTGGTCATGACTGCAACGCCAATTCCTAGAACACTGGCAATGAG
TGCTTATGGCGATTTAGATACATCAATTATTGATGAATTACCGCCAGGTCGAACTCCAATTCAGACCGTCACGATTCCGC
TAGATCGTCGTGAAGAAGTACTGCATCGAATTGCTTCAAACTGCCGAGAAGGTAAACAAGCCTACTGGGTATGTACTCTG
GTTGAACAGTCCGAAACTTTAGATGCTCAAGCCGCCGAAGCCACTTATCAAGAAATGAAAGAGCGCTTTCCTGAACTTAA
TATTGGTTTGGTTCATGGCAAAATGAAAGCCGATGAAAAACAGGCTGTCATGCAAGCATTTAAAAACAATGAACTACAGC
TGCTAATTGCCACAACCGTTATTGAGGTTGGGGTAGATGTACCTAACGCTTCGATTATGGTCATTGAGAATGCTGAACGA
TTAGGGCTTTCACAGCTACACCAATTACGAGGTCGTGTAGGACGAGGTGCAAAAGCCAGTTTTTGCGTTCTTCTCTATAA
ACCACCACTTTCACAAAATGGGCAAGAAAGACTTTCAATTTTAAGAGAAAGTAATGATGGCTTTGTTATTGCTGAAAAAG
ATCTTGAGCTAAGGGGCCCGGGTGAGTTATTAGGAACAAAACAAACAGGTGATATGGGTTTCCGTGTCGCACGTTTAGAG
CGAGATGATCATTTATTGAGTCAAGCACACTACGTTGCACAACAAGTTCTAAAAGATTACCCTGAGCAAGCTGATGCCTT
ATTGAAGCGCTGGCTTCCCGAAGCTCCTCGATACGCATATGTTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(466-576)

RecG wedge domain (RecG_wedge)

(7-163)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(605-663)

DEAD/DEAH box helicase (DEAD)

(262-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.925

98.238

0.49
  recG/mmsA Streptococcus pneumoniae R6

41.504

97.651

0.405
  recG/mmsA Streptococcus pneumoniae R36A

41.504

97.651

0.405
  recG Bacillus subtilis subsp. subtilis str. 168

38.574

100

0.389