Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FF962_RS28875 | Genome accession | NZ_CP040684 |
| Coordinates | 6018661..6019533 (-) | Length | 290 a.a. |
| NCBI ID | WP_021264129.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain C79 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6013661..6024533
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FF962_RS28830 (FF962_28835) | - | 6014522..6014692 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| FF962_RS28835 (FF962_28840) | - | 6014718..6015167 (-) | 450 | WP_021264127.1 | MOSC domain-containing protein | - |
| FF962_RS28840 (FF962_28845) | - | 6015164..6015793 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| FF962_RS28845 (FF962_28850) | - | 6015926..6016351 (+) | 426 | WP_021264128.1 | GNAT family N-acetyltransferase | - |
| FF962_RS28850 (FF962_28855) | - | 6016348..6016818 (+) | 471 | WP_003094664.1 | hypothetical protein | - |
| FF962_RS28855 (FF962_28860) | - | 6016815..6017504 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| FF962_RS28860 (FF962_28865) | - | 6017610..6017819 (+) | 210 | WP_069953234.1 | hypothetical protein | - |
| FF962_RS28865 (FF962_28870) | yacG | 6017856..6018056 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| FF962_RS28870 (FF962_28875) | coaE | 6018053..6018664 (-) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| FF962_RS28875 (FF962_28880) | pilD | 6018661..6019533 (-) | 873 | WP_021264129.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| FF962_RS28880 (FF962_28885) | pilC | 6019537..6020757 (-) | 1221 | WP_023101565.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| FF962_RS28885 (FF962_28890) | pilB | 6020761..6022461 (-) | 1701 | WP_021264132.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FF962_RS28890 (FF962_28895) | pilA | 6022693..6023142 (+) | 450 | WP_069953233.1 | pilin | Machinery gene |
| FF962_RS28900 (FF962_28905) | nadC | 6023344..6024192 (-) | 849 | WP_021264134.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31823.84 Da Isoelectric Point: 7.3860
>NTDB_id=366482 FF962_RS28875 WP_021264129.1 6018661..6019533(-) (pilD) [Pseudomonas aeruginosa strain C79]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKATIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKATIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=366482 FF962_RS28875 WP_021264129.1 6018661..6019533(-) (pilD) [Pseudomonas aeruginosa strain C79]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCACCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCACCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
56.071 |
96.552 |
0.541 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |