Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G2583_RS06090 Genome accession   NC_013941
Coordinates   1247616..1248245 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O55:H7 str. CB9615     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242616..1253245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G2583_RS06065 (G2583_1190) ycbZ 1243017..1244777 (-) 1761 WP_000156526.1 AAA family ATPase -
  G2583_RS06070 (G2583_1191) matP 1244963..1245415 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  G2583_RS06075 (G2583_1192) ompA 1245491..1246531 (-) 1041 WP_000750416.1 porin OmpA -
  G2583_RS06085 (G2583_1193) sulA 1246888..1247397 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G2583_RS06090 (G2583_1194) sxy/tfoX 1247616..1248245 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G2583_RS06095 (G2583_1195) yccS 1248208..1250370 (-) 2163 WP_000875023.1 YccS family putative transporter -
  G2583_RS06100 (G2583_1196) yccF 1250380..1250826 (-) 447 WP_001261230.1 YccF domain-containing protein -
  G2583_RS06105 (G2583_1197) helD 1250949..1253003 (+) 2055 WP_001419031.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=36645 G2583_RS06090 WP_000839153.1 1247616..1248245(+) (sxy/tfoX) [Escherichia coli O55:H7 str. CB9615]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=36645 G2583_RS06090 WP_000839153.1 1247616..1248245(+) (sxy/tfoX) [Escherichia coli O55:H7 str. CB9615]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment