Detailed information NTG0036637

Bioinformatically predicted

Overview

• Name: Cj0011c
• Type: Machinery gene
• Locus tag: DEFDS_RS01795
• Genome accession: NC_013939
• Coordinates: 350705..350959 (+)
• Length: 84 a.a.
• NCBI ID: WP_013007105.1
• Uniprot ID: D3PB84
• Organism: Deferribacter desulfuricans SSM1
• Function: DNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 345705..355959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DEFDS_RS01765 (DEFDS_0350)	jag	346190..346822 (+)	633	WP_013007099.1	RNA-binding cell elongation regulator Jag/EloR	-
DEFDS_RS01770 (DEFDS_0351)	-	346822..347061 (+)	240	WP_013007100.1	YHS domain-containing protein	-
DEFDS_RS01775 (DEFDS_0352)	fsa	347072..347716 (+)	645	WP_013007101.1	fructose-6-phosphate aldolase	-
DEFDS_RS01780 (DEFDS_0353)	-	348211..349749 (+)	1539	WP_013007102.1	ATP-binding protein	-
DEFDS_RS01785 (DEFDS_0354)	-	349860..350150 (+)	291	WP_013007103.1	nucleotidyltransferase domain-containing protein	-
DEFDS_RS13120 (DEFDS_0355)	-	350147..350629 (+)	483	WP_013007104.1	hypothetical protein	-
DEFDS_RS01795 (DEFDS_0356)	Cj0011c	350705..350959 (+)	255	WP_013007105.1	ComEA family DNA-binding protein	Machinery gene
DEFDS_RS12875	-	351206..351376 (+)	171	WP_084742497.1	four helix bundle protein	-
DEFDS_RS01800 (DEFDS_0358)	-	351378..351641 (+)	264	WP_013007106.1	GIY-YIG nuclease family protein	-
DEFDS_RS01805	-	351628..351870 (+)	243	WP_050742499.1	four helix bundle protein	-
DEFDS_RS13360 (DEFDS_0360)	-	352312..352724 (+)	413	Protein_356	ORF6N domain-containing protein	-
DEFDS_RS12885	-	352790..352897 (+)	108	WP_041223814.1	four helix bundle protein	-
DEFDS_RS01820 (DEFDS_0363)	-	353166..353447 (+)	282	WP_013007107.1	hypothetical protein	-
DEFDS_RS01825 (DEFDS_0364)	-	353461..353799 (+)	339	WP_153801454.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	-
DEFDS_RS01830	-	353827..354042 (+)	216	WP_041223554.1	hypothetical protein	-
DEFDS_RS13125	-	354262..354423 (+)	162	WP_407919196.1	IS3 family transposase	-

Sequence

Protein

• Length: 84 a.a.
• Molecular weight: 9621.52 Da
• Isoelectric Point: 9.2229

>NTDB_id=36637 DEFDS_RS01795 WP_013007105.1 350705..350959(+) (Cj0011c) [Deferribacter desulfuricans SSM1]
MKKLLFLMIFIFITSVLFAKININTATKEELMSLKGLGEKKAEAIIERREKKPFDSIEELLEIKGIGKRFLEKNKDNICV
GSDC

Nucleotide

• Length: 255 bp

>NTDB_id=36637 DEFDS_RS01795 WP_013007105.1 350705..350959(+) (Cj0011c) [Deferribacter desulfuricans SSM1]
ATGAAGAAACTATTATTTCTAATGATTTTCATCTTTATTACATCTGTTTTATTTGCAAAAATAAACATAAATACTGCAAC
AAAAGAGGAGTTGATGAGTTTAAAAGGTTTAGGGGAGAAAAAAGCTGAGGCTATCATAGAGAGGAGGGAGAAAAAACCTT
TTGATAGTATTGAAGAACTATTAGAGATAAAAGGTATAGGTAAGAGGTTTTTGGAGAAGAACAAAGACAATATTTGCGTA
GGCTCTGATTGCTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (19-79)

3D structure

• AlphaFold DB: D3PB84

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.5	95.238	0.5
comE1/comEA	Haemophilus influenzae Rd KW20	56.061	78.571	0.44
comEA	Vibrio parahaemolyticus RIMD 2210633	39.13	100	0.429
comE	Neisseria gonorrhoeae MS11	40.476	100	0.405
comE	Neisseria gonorrhoeae MS11	40.476	100	0.405
comE	Neisseria gonorrhoeae MS11	40.476	100	0.405
comE	Neisseria gonorrhoeae MS11	40.476	100	0.405
comEA/comE1	Glaesserella parasuis strain SC1401	53.226	73.81	0.393
comEA	Legionella pneumophila str. Paris	53.226	73.81	0.393
comEA	Legionella pneumophila strain ERS1305867	53.226	73.81	0.393
comEA	Lactococcus lactis subsp. cremoris KW2	44.928	82.143	0.369
comEA	Acinetobacter baylyi ADP1	50	73.81	0.369
comEA	Bacillus subtilis subsp. subtilis str. 168	49.206	75	0.369