Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FGE23_RS07025 Genome accession   NZ_CP040672
Coordinates   1387259..1388212 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382259..1393212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS07000 - 1382303..1383736 (+) 1434 WP_162008365.1 HAMP domain-containing sensor histidine kinase -
  FGE23_RS07005 rapC 1383889..1385037 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  FGE23_RS07010 phrC 1385021..1385140 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  FGE23_RS07015 - 1385290..1385400 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  FGE23_RS07020 - 1385480..1386844 (-) 1365 WP_146276115.1 aspartate kinase -
  FGE23_RS07025 ceuB 1387259..1388212 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  FGE23_RS07030 - 1388202..1389149 (+) 948 WP_077721797.1 iron chelate uptake ABC transporter family permease subunit -
  FGE23_RS07035 - 1389143..1389901 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  FGE23_RS07040 - 1389923..1390867 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  FGE23_RS07045 - 1390909..1392333 (-) 1425 WP_015388705.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=366354 FGE23_RS07025 WP_003156332.1 1387259..1388212(+) (ceuB) [Bacillus amyloliquefaciens strain X030]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=366354 FGE23_RS07025 WP_003156332.1 1387259..1388212(+) (ceuB) [Bacillus amyloliquefaciens strain X030]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTCTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGGAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment