Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   M594_RS09365 Genome accession   NZ_CP047883
Coordinates   1945587..1948121 (-) Length   844 a.a.
NCBI ID   WP_173876648.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1940587..1953121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS09335 (M594_09375) - 1940640..1941314 (-) 675 WP_153210263.1 CPBP family intramembrane glutamic endopeptidase -
  M594_RS09340 (M594_09380) - 1941311..1941874 (-) 564 WP_153210262.1 DNA-3-methyladenine glycosylase I -
  M594_RS09345 (M594_09385) ruvA 1941884..1942477 (-) 594 WP_153210261.1 Holliday junction branch migration protein RuvA Machinery gene
  M594_RS09350 (M594_09390) hexB 1942493..1944442 (-) 1950 WP_173876645.1 DNA mismatch repair endonuclease MutL Machinery gene
  M594_RS09355 (M594_09400) - 1944650..1945090 (+) 441 WP_173876646.1 LytTR family DNA-binding domain-containing protein -
  M594_RS09360 (M594_09405) - 1945087..1945545 (+) 459 WP_173876647.1 DUF3021 domain-containing protein -
  M594_RS09365 (M594_09410) hexA 1945587..1948121 (-) 2535 WP_173876648.1 DNA mismatch repair protein MutS Machinery gene
  M594_RS09370 (M594_09415) argR 1948172..1948618 (-) 447 WP_001231476.1 arginine repressor -
  M594_RS09375 (M594_09420) argS 1948754..1950445 (+) 1692 WP_173876649.1 arginine--tRNA ligase -
  M594_RS09380 (M594_09425) - 1950574..1950819 (+) 246 WP_049544515.1 hypothetical protein -
  M594_RS09385 (M594_09430) nrdI 1950986..1951450 (-) 465 WP_173876650.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  M594_RS09390 (M594_09435) - 1951528..1952061 (-) 534 WP_023946835.1 hypothetical protein -

Sequence


Protein


Download         Length: 844 a.a.        Molecular weight: 94627.05 Da        Isoelectric Point: 4.8822

>NTDB_id=366352 M594_RS09365 WP_173876648.1 1945587..1948121(-) (hexA) [Streptococcus mitis strain S022-V3-A4]
MTTEKLSPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAGVPYHSAQQYIDVLI
EQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGTVVDSSKPDSQNNFLVAIDRAGNQFGLAYMDLVTGDFYVTGLLDFTL
VCGEIRNLKAREVVLGYDLSEEEEQILSRQMNLVLSYEKEGFEDLHLLDSRLAAVEQAASSKLLQYVHRTQMRELNHLKP
VIRYEIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLDETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFF
ERSDLTDSLKGVYDIERLASRVSFGKTNPKELLQLATTLSSVPRIRAILEGMEQPALAYLIAQLDAIPELESLISAAIAP
EASHVITDGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKEKENSGISTLKIEYNKKDGYYFHVTNSQLGNVPAHFFRKA
TLKNSERFGTEELARIEGDMLEAREKSANLEYEIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFG
DDSQIDIQKGRHAVVEKVMGAQTYIPNTIQMGGDTSIQLITGPNMSGKSTYMRQLAMTAVMAQMGSYVPAENAYLPIFDA
IFTRIGAADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHEL
TSLESSLEHLVNVHVATLEQGGQVTFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPVLMRQTSD
VTEQISLFDTAEEHPILAELAKLDIYNMTPMQAMNVLVELKQKL

Nucleotide


Download         Length: 2535 bp        

>NTDB_id=366352 M594_RS09365 WP_173876648.1 1945587..1948121(-) (hexA) [Streptococcus mitis strain S022-V3-A4]
ATGACGACAGAAAAGCTATCACCCGGCATGCAACAGTATGTGGATATTAAAAAGCAATATCCAGATGCTTTTTTGCTCTT
TCGGATGGGTGATTTTTATGAATTATTTTATGAGGATGCGGTCAATGCTGCGCAGATTCTGGAAATTTCCTTAACGAGTC
GCAACAAGAATGCCGACAATCCGATTCCTATGGCGGGTGTTCCCTATCATTCTGCCCAACAGTATATCGATGTCTTGATT
GAGCAGGGCTATAAGGTAGCCATTGCTGAACAGATGGAAGATCCTAAACAAGCAGTTGGGGTTGTGAAACGAGAGGTTGT
TCAGGTCATTACGCCAGGGACAGTGGTCGATAGCAGTAAGCCGGATAGTCAGAACAACTTCTTGGTTGCCATAGACCGTG
CTGGCAATCAATTTGGCCTAGCTTATATGGACCTGGTGACGGGTGACTTTTATGTGACAGGTCTTTTGGATTTCACGCTG
GTTTGTGGGGAAATCCGTAATCTCAAGGCGCGAGAAGTGGTGCTGGGCTATGACTTGTCTGAGGAAGAGGAACAAATCCT
TAGTCGTCAGATGAATCTGGTACTTTCCTATGAAAAAGAAGGCTTTGAAGACCTTCATTTACTGGATTCACGATTAGCAG
CTGTGGAGCAAGCGGCATCTAGTAAGTTGCTCCAGTATGTCCATCGAACCCAGATGAGGGAATTGAACCACCTCAAACCT
GTTATCCGCTATGAAATCAAGGATTTCTTGCAGATGGATTATGCGACCAAGGCTAGTCTGGATTTGGTTGAGAATGCTCG
GTCAGGCAAGAAGCAAGGCAGTCTTTTCTGGCTTTTGGATGAAACCAAAACAGCTATGGGTATGCGGCTCTTGCGGTCTT
GGATTCATCGCCCCTTGATTGATAAGGAACGAATTGTCCAACGCCAAGAAGTTGTGCAGGTCTTTCTCGACCATTTCTTT
GAGCGTAGTGATTTGACAGACAGTCTCAAGGGTGTTTATGACATTGAGCGCTTGGCTAGTCGTGTTTCTTTTGGTAAAAC
CAATCCCAAGGAACTCTTGCAGTTGGCGACTACCTTGTCTAGTGTGCCACGGATTCGTGCGATTTTAGAGGGGATGGAGC
AACCTGCTCTAGCCTATCTGATCGCACAACTAGATGCCATTCCAGAGTTGGAGAGCTTGATTAGTGCAGCGATTGCTCCT
GAAGCTTCTCATGTGATTACAGATGGGGGTATTATCCGGACTGGATTTGATGAGACCTTAGACAAGTACCGTCGCGTTCT
CAGAGAAGGGACTAGCTGGATTGCTGAAATTGAGGCCAAGGAGAAAGAAAACTCTGGTATTAGTACGCTTAAGATTGAGT
ACAATAAGAAGGATGGCTACTATTTCCATGTGACCAATTCGCAACTGGGGAATGTGCCAGCCCACTTTTTCCGCAAGGCG
ACGCTGAAAAACTCGGAACGTTTTGGAACCGAAGAATTAGCCCGTATCGAGGGAGATATGCTGGAGGCGCGTGAGAAGTC
AGCTAACCTAGAGTACGAAATTTTTATGCGTATTCGTGAAGAGGTCAGCAAGTACATCCAGCGTTTGCAGGCTCTAGCCC
AAGGAATTGCGACGGTTGATGTCTTACAGAGTCTGGCGGTTGTGGCCGAAACTCAGCATTTGATTCGACCTGAGTTTGGC
GATGACTCACAAATCGATATCCAGAAAGGGCGCCATGCTGTCGTTGAAAAGGTCATGGGAGCTCAGACCTATATTCCAAA
TACCATTCAAATGGGAGGGGATACTAGTATCCAGTTGATTACAGGGCCTAACATGAGTGGGAAGTCGACCTATATGCGTC
AGCTGGCCATGACAGCGGTGATGGCTCAGATGGGTTCTTACGTACCAGCAGAGAATGCTTATTTACCGATTTTTGATGCT
ATCTTTACCCGTATCGGAGCAGCAGATGACTTGGTTTCAGGTCAGTCCACCTTTATGGTGGAGATGATGGAGGCCAATAA
TGCCATTTCGCATGCGACCAAGGACTCTCTCATTCTCTTTGATGAATTGGGACGAGGAACTGCAACTTATGACGGAATGG
CTCTTGCCCAGTCCATCATCGAATATATCCATGAGCATATCGGAGCCAAGACCCTCTTTGCGACCCACTACCATGAGTTG
ACCAGTCTGGAGTCTAGCTTGGAACACTTGGTCAATGTTCACGTGGCAACTTTGGAGCAAGGTGGGCAGGTCACCTTCCT
TCACAAGATTGAACCAGGACCAGCTGATAAATCCTACGGTATCCATGTTGCCAAGATTGCTGGTTTGCCAGCAGACCTTC
TAGCAAGGGCGGATAAGATTTTGACTCAGTTAGAGAATCAAGGTACAGAAAGTCCAGTTCTTATGAGGCAAACAAGCGAC
GTCACGGAACAGATTTCACTATTTGATACGGCAGAAGAGCATCCTATCCTAGCAGAATTAGCTAAATTGGACATTTACAA
CATGACACCCATGCAGGCTATGAATGTCTTGGTCGAGTTGAAACAAAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

96.327

100

0.963

  mutS Pseudomonas stutzeri strain ATCC 17587

36.3

100

0.367


Multiple sequence alignment