Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   M594_RS09045 Genome accession   NZ_CP047883
Coordinates   1895506..1896204 (+) Length   232 a.a.
NCBI ID   WP_049500915.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1890506..1901204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS09010 (M594_09050) - 1890545..1891480 (-) 936 WP_173876623.1 ABC transporter ATP-binding protein -
  M594_RS09015 (M594_09055) slmA 1891638..1891820 (-) 183 WP_149561018.1 salivaricin M family lantibiotic -
  M594_RS09020 (M594_09060) - 1891975..1892274 (-) 300 WP_254597150.1 DUF5966 family protein -
  M594_RS09025 (M594_09065) - 1892288..1892590 (-) 303 WP_173876625.1 DUF5962 family protein -
  M594_RS09030 (M594_09070) - 1892647..1893375 (-) 729 WP_173876626.1 ABC transporter permease -
  M594_RS09035 (M594_09075) - 1893372..1894121 (-) 750 WP_173876627.1 ABC transporter permease -
  M594_RS09040 (M594_09080) - 1894127..1895038 (-) 912 WP_080976359.1 ABC transporter ATP-binding protein -
  M594_RS09045 (M594_09085) scnR 1895506..1896204 (+) 699 WP_049500915.1 response regulator transcription factor Regulator
  M594_RS09050 (M594_09090) - 1896201..1897571 (+) 1371 WP_064276746.1 sensor histidine kinase -
  M594_RS10160 - 1897594..1897902 (-) 309 WP_064276747.1 DUF5966 family protein -
  M594_RS09055 (M594_09095) - 1898018..1898110 (+) 93 WP_049502635.1 type I toxin-antitoxin system Fst family toxin -
  M594_RS09060 (M594_09100) - 1898938..1899354 (-) 417 WP_173876628.1 GNAT family N-acetyltransferase -
  M594_RS09065 (M594_09105) - 1899366..1900061 (-) 696 WP_173876629.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26388.27 Da        Isoelectric Point: 5.3975

>NTDB_id=366348 M594_RS09045 WP_049500915.1 1895506..1896204(+) (scnR) [Streptococcus mitis strain S022-V3-A4]
MNFEQQLLNKHILIIDDDKILNSSIRDILIAYGFSNLTSAYDIESSLNMIETEQFDLFLLDIMLPDGDGYTLAKHIRQKG
DTPILFLTAKNNPEDEVAGFNAGGDDYVVKPFIPKNLIYRIMALLRRSYKSEQEAIQIGQTLVSFRNATVQKNGAEISIT
PIEIKILKKLYDNKNYIVSTESLCDTIWGVDSFGYENSLTVHIRKIREKIEENPSKPQYLKTAKGLGYKLLS

Nucleotide


Download         Length: 699 bp        

>NTDB_id=366348 M594_RS09045 WP_049500915.1 1895506..1896204(+) (scnR) [Streptococcus mitis strain S022-V3-A4]
ATGAATTTCGAACAACAACTCCTGAATAAGCACATCCTTATCATTGATGACGATAAAATTTTAAACTCTTCCATAAGAGA
TATTCTCATTGCCTACGGATTTTCCAATCTAACATCAGCCTATGATATAGAATCTAGTTTGAACATGATTGAAACAGAAC
AGTTCGACCTTTTCCTTTTGGACATTATGCTCCCCGATGGTGATGGCTACACATTAGCAAAACATATCCGACAAAAAGGC
GATACTCCTATCCTCTTTCTGACTGCCAAAAATAATCCTGAAGATGAGGTAGCTGGTTTCAATGCTGGTGGTGATGATTA
TGTCGTAAAACCCTTCATTCCAAAAAATCTTATCTATCGTATTATGGCTCTGCTCAGGAGAAGCTATAAATCAGAACAGG
AAGCAATACAGATTGGACAGACTTTGGTAAGTTTTCGGAATGCAACAGTACAAAAGAATGGAGCAGAAATTTCTATTACA
CCAATTGAAATTAAGATTTTGAAAAAACTTTACGATAATAAAAATTACATCGTTTCAACTGAATCTCTCTGTGATACGAT
TTGGGGAGTGGATAGCTTTGGTTATGAAAACTCTTTGACTGTACATATTCGGAAAATTCGAGAAAAAATAGAAGAAAATC
CTTCAAAACCTCAATATTTAAAGACAGCTAAAGGGCTGGGATATAAATTGTTATCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-121)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

43.478

99.138

0.431
  micA Streptococcus pneumoniae Cp1015

38.158

98.276

0.375
  vicR Streptococcus mutans UA159

37.339

100

0.375

Multiple sequence alignment