Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   FGE23_RS03220 Genome accession   NZ_CP040672
Coordinates   645367..645486 (+) Length   39 a.a.
NCBI ID   WP_069473622.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 640367..650486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS03200 narK 640526..641716 (-) 1191 WP_146275724.1 nitrate transporter NarK -
  FGE23_RS03205 argS 641851..643521 (-) 1671 WP_146275726.1 arginine--tRNA ligase -
  FGE23_RS03210 - 643518..643946 (-) 429 WP_003151069.1 DUF1934 domain-containing protein -
  FGE23_RS03215 rapF 644238..645383 (+) 1146 WP_077722992.1 tetratricopeptide repeat protein Regulator
  FGE23_RS03220 phrF 645367..645486 (+) 120 WP_069473622.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  FGE23_RS03225 - 645685..645888 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  FGE23_RS03230 - 645902..646105 (+) 204 WP_146275728.1 hypothetical protein -
  FGE23_RS03240 - 646512..646793 (+) 282 WP_014306021.1 hypothetical protein -
  FGE23_RS03245 - 646837..647349 (+) 513 WP_070082524.1 stage II sporulation protein M -
  FGE23_RS03255 - 647940..648158 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  FGE23_RS03260 speB 648328..649200 (-) 873 WP_003151054.1 agmatinase -
  FGE23_RS03265 speE 649260..650090 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4282.10 Da        Isoelectric Point: 8.0195

>NTDB_id=366340 FGE23_RS03220 WP_069473622.1 645367..645486(+) (phrF) [Bacillus amyloliquefaciens strain X030]
MKLKYKLALTCLAVSTVFVSADIASAPEHQFEIAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=366340 FGE23_RS03220 WP_069473622.1 645367..645486(+) (phrF) [Bacillus amyloliquefaciens strain X030]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAATTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436

Multiple sequence alignment