Detailed information NTG0366339

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: FGE23_RS03215
• Genome accession: NZ_CP040672
• Coordinates: 644238..645383 (+)
• Length: 381 a.a.
• NCBI ID: WP_077722992.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain X030
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 639238..650383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGE23_RS03195	-	639712..640428 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
FGE23_RS03200	narK	640526..641716 (-)	1191	WP_146275724.1	nitrate transporter NarK	-
FGE23_RS03205	argS	641851..643521 (-)	1671	WP_146275726.1	arginine--tRNA ligase	-
FGE23_RS03210	-	643518..643946 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
FGE23_RS03215	rapF	644238..645383 (+)	1146	WP_077722992.1	tetratricopeptide repeat protein	Regulator
FGE23_RS03220	phrF	645367..645486 (+)	120	WP_069473622.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
FGE23_RS03225	-	645685..645888 (+)	204	WP_003151064.1	helix-turn-helix transcriptional regulator	-
FGE23_RS03230	-	645902..646105 (+)	204	WP_146275728.1	hypothetical protein	-
FGE23_RS03240	-	646512..646793 (+)	282	WP_014306021.1	hypothetical protein	-
FGE23_RS03245	-	646837..647349 (+)	513	WP_070082524.1	stage II sporulation protein M	-
FGE23_RS03255	-	647940..648158 (-)	219	WP_003151056.1	LuxR C-terminal-related transcriptional regulator	-
FGE23_RS03260	speB	648328..649200 (-)	873	WP_003151054.1	agmatinase	-
FGE23_RS03265	speE	649260..650090 (-)	831	WP_003151052.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45541.70 Da
• Isoelectric Point: 4.6057

>NTDB_id=366339 FGE23_RS03215 WP_077722992.1 644238..645383(+) (rapF) [Bacillus amyloliquefaciens strain X030]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=366339 FGE23_RS03215 WP_077722992.1 644238..645383(+) (rapF) [Bacillus amyloliquefaciens strain X030]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTATTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.74	100	0.787
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567