Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LROSRS0_RS00045 | Genome accession | NZ_CP040576 |
| Coordinates | 10454..10996 (+) | Length | 180 a.a. |
| NCBI ID | WP_017262421.1 | Uniprot ID | A0A0R1RL00 |
| Organism | Furfurilactobacillus rossiae strain RS | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5454..15996
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LROSRS0_RS00030 (LROSRS0_0006) | gyrA | 6682..9330 (+) | 2649 | WP_017262424.1 | DNA gyrase subunit A | - |
| LROSRS0_RS00035 (LROSRS0_0007) | - | 9480..9809 (+) | 330 | WP_017262423.1 | heavy metal-binding domain-containing protein | - |
| LROSRS0_RS00040 (LROSRS0_0008) | rpsF | 10118..10417 (+) | 300 | WP_017262422.1 | 30S ribosomal protein S6 | - |
| LROSRS0_RS00045 (LROSRS0_0009) | ssb | 10454..10996 (+) | 543 | WP_017262421.1 | single-stranded DNA-binding protein | Machinery gene |
| LROSRS0_RS00050 (LROSRS0_0010) | rpsR | 11022..11264 (+) | 243 | WP_017262420.1 | 30S ribosomal protein S18 | - |
| LROSRS0_RS00055 (LROSRS0_0011) | - | 11451..13478 (+) | 2028 | WP_017262419.1 | DHH family phosphoesterase | - |
| LROSRS0_RS00060 (LROSRS0_0012) | rplI | 13484..13936 (+) | 453 | WP_017262418.1 | 50S ribosomal protein L9 | - |
| LROSRS0_RS00065 (LROSRS0_0013) | dnaB | 14017..15399 (+) | 1383 | WP_017262417.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19384.79 Da Isoelectric Point: 4.5865
>NTDB_id=365413 LROSRS0_RS00045 WP_017262421.1 10454..10996(+) (ssb) [Furfurilactobacillus rossiae strain RS]
MINRAVLTGRLTRDPEVRYTQSGAAVGSFTLAVDRQFTNQQGQREADFINCVIWRKSAENFANFTHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFALLESRSQSDQRTSGNTNDNGGYNNNAPQSGSANPFGGTGNNGGNNAGNTAPSSQSSQTP
ADPFAGNGESIDISDDDLPF
MINRAVLTGRLTRDPEVRYTQSGAAVGSFTLAVDRQFTNQQGQREADFINCVIWRKSAENFANFTHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFALLESRSQSDQRTSGNTNDNGGYNNNAPQSGSANPFGGTGNNGGNNAGNTAPSSQSSQTP
ADPFAGNGESIDISDDDLPF
Nucleotide
Download Length: 543 bp
>NTDB_id=365413 LROSRS0_RS00045 WP_017262421.1 10454..10996(+) (ssb) [Furfurilactobacillus rossiae strain RS]
ATGATTAATCGCGCAGTTCTTACCGGACGCTTAACCCGTGACCCTGAAGTTCGTTACACACAATCAGGAGCAGCTGTTGG
TTCATTTACGTTGGCGGTGGACCGTCAGTTCACTAACCAACAGGGCCAACGAGAGGCTGATTTCATTAACTGTGTAATCT
GGCGTAAGTCAGCGGAAAACTTCGCTAACTTCACGCATAAGGGTTCACTAGTTGGTATCGAGGGCCGGATTCAAACCCGG
AACTACGAGAACCAACAGGGCCAGCGCGTTTACGTCACTGAAGTGGTCGTCGAAAACTTTGCCTTACTAGAATCCCGTTC
TCAATCTGATCAACGGACTTCTGGTAACACAAATGACAACGGCGGCTACAACAATAATGCTCCTCAATCAGGAAGCGCCA
ATCCGTTTGGCGGCACTGGCAACAATGGCGGGAACAATGCAGGTAATACTGCACCTTCCAGTCAATCAAGCCAGACCCCT
GCTGATCCTTTCGCTGGTAACGGTGAAAGCATTGACATCTCGGATGACGACCTTCCATTCTAG
ATGATTAATCGCGCAGTTCTTACCGGACGCTTAACCCGTGACCCTGAAGTTCGTTACACACAATCAGGAGCAGCTGTTGG
TTCATTTACGTTGGCGGTGGACCGTCAGTTCACTAACCAACAGGGCCAACGAGAGGCTGATTTCATTAACTGTGTAATCT
GGCGTAAGTCAGCGGAAAACTTCGCTAACTTCACGCATAAGGGTTCACTAGTTGGTATCGAGGGCCGGATTCAAACCCGG
AACTACGAGAACCAACAGGGCCAGCGCGTTTACGTCACTGAAGTGGTCGTCGAAAACTTTGCCTTACTAGAATCCCGTTC
TCAATCTGATCAACGGACTTCTGGTAACACAAATGACAACGGCGGCTACAACAATAATGCTCCTCAATCAGGAAGCGCCA
ATCCGTTTGGCGGCACTGGCAACAATGGCGGGAACAATGCAGGTAATACTGCACCTTCCAGTCAATCAAGCCAGACCCCT
GCTGATCCTTTCGCTGGTAACGGTGAAAGCATTGACATCTCGGATGACGACCTTCCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
65.385 |
100 |
0.661 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.667 |
100 |
0.567 |