Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   E3S92_RS04020 Genome accession   NZ_CP047833
Coordinates   811686..813746 (-) Length   686 a.a.
NCBI ID   WP_160190120.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_926     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 806686..818746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S92_RS03990 (E3S92_03990) rnc 806952..807683 (-) 732 WP_000043237.1 ribonuclease III -
  E3S92_RS03995 (E3S92_03995) - 807798..808031 (-) 234 WP_000426914.1 acyl carrier protein -
  E3S92_RS04000 (E3S92_04000) fabG 808274..809008 (-) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  E3S92_RS04005 (E3S92_04005) fabD 809001..809927 (-) 927 WP_000047361.1 ACP S-malonyltransferase -
  E3S92_RS04010 (E3S92_04010) plsX 809920..810906 (-) 987 WP_000239741.1 phosphate acyltransferase PlsX -
  E3S92_RS04015 (E3S92_04015) fapR 810911..811483 (-) 573 WP_002864472.1 transcription factor FapR -
  E3S92_RS04020 (E3S92_04020) recG 811686..813746 (-) 2061 WP_160190120.1 ATP-dependent DNA helicase RecG Machinery gene
  E3S92_RS04025 (E3S92_04025) fakA 813936..815582 (-) 1647 WP_160190121.1 fatty acid kinase catalytic subunit FakA -
  E3S92_RS04030 (E3S92_04030) - 815597..815971 (-) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  E3S92_RS04035 (E3S92_04035) rpmB 816414..816602 (+) 189 WP_000517908.1 50S ribosomal protein L28 -
  E3S92_RS04040 (E3S92_04040) - 816983..817624 (-) 642 WP_000547900.1 thiamine diphosphokinase -
  E3S92_RS04045 (E3S92_04045) rpe 817631..818275 (-) 645 WP_000164332.1 ribulose-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78351.95 Da        Isoelectric Point: 6.1562

>NTDB_id=364609 E3S92_RS04020 WP_160190120.1 811686..813746(-) (recG) [Staphylococcus aureus strain UP_926]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYIAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADIQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLIALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=364609 E3S92_RS04020 WP_160190120.1 811686..813746(-) (recG) [Staphylococcus aureus strain UP_926]
TTGGCGAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTGTT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACTAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATATAGCTCCAGTAGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACTGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGTACACAAACTCAAGAAAACGCAGATATTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACGTTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACTTAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTAGTTGCTGCAATTTGTATGTATGCGTTAAAAACGGCTGGCTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATTGCTTTATTTGGAGATTCTATGAACGTTGCGTTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCTTTGATTCAAGATGATGTAATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAACTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACCCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTTATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCTCGTGTAGGATTATTGCATGGTAAGTTGTCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGTAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGCCATTTTGTTGAAGAAAATTTATTACATCGCAGTTTTGACTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

RecG wedge domain (RecG_wedge)

(16-175)

DEAD/DEAH box helicase (DEAD)

(267-422)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516
  recG/mmsA Streptococcus pneumoniae R6

50.233

94.023

0.472
  recG/mmsA Streptococcus pneumoniae R36A

50.233

94.023

0.472
  recG Neisseria meningitidis strain C311

40.149

97.668

0.392

Multiple sequence alignment