Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   E3T01_RS04080 Genome accession   NZ_CP047826
Coordinates   821872..823932 (-) Length   686 a.a.
NCBI ID   WP_001151509.1    Uniprot ID   P64324
Organism   Staphylococcus aureus strain UP_1239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 816872..828932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T01_RS04050 (E3T01_04050) rnc 816946..817677 (-) 732 WP_000043237.1 ribonuclease III -
  E3T01_RS04055 (E3T01_04055) - 817793..818026 (-) 234 WP_000426914.1 acyl carrier protein -
  E3T01_RS04060 (E3T01_04060) fabG 818460..819194 (-) 735 WP_000167263.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  E3T01_RS04065 (E3T01_04065) fabD 819187..820113 (-) 927 WP_000047348.1 ACP S-malonyltransferase -
  E3T01_RS04070 (E3T01_04070) plsX 820106..821092 (-) 987 WP_000239749.1 phosphate acyltransferase PlsX -
  E3T01_RS04075 (E3T01_04075) fapR 821097..821669 (-) 573 WP_001548538.1 transcription factor FapR -
  E3T01_RS04080 (E3T01_04080) recG 821872..823932 (-) 2061 WP_001151509.1 ATP-dependent DNA helicase RecG Machinery gene
  E3T01_RS04085 (E3T01_04085) fakA 824122..825768 (-) 1647 WP_000623902.1 fatty acid kinase catalytic subunit FakA -
  E3T01_RS04090 (E3T01_04090) - 825783..826157 (-) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  E3T01_RS04095 (E3T01_04095) rpmB 826600..826788 (+) 189 WP_000517908.1 50S ribosomal protein L28 -
  E3T01_RS04100 (E3T01_04100) - 827169..827810 (-) 642 WP_000547910.1 thiamine diphosphokinase -
  E3T01_RS04105 (E3T01_04105) rpe 827817..828461 (-) 645 WP_000164332.1 ribulose-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78343.90 Da        Isoelectric Point: 6.1562

>NTDB_id=364342 E3T01_RS04080 WP_001151509.1 821872..823932(-) (recG) [Staphylococcus aureus strain UP_1239]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=364342 E3T01_RS04080 WP_001151509.1 821872..823932(-) (recG) [Staphylococcus aureus strain UP_1239]
TTGGCTAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACTAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTAGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACCGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGAGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGGACACAAACTCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACATTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACTTAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTAGTTGCTGCAATTTGTATGTATGCGTTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCTTTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACTCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTAATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTGTCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGCAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGCGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(267-422)

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

RecG wedge domain (RecG_wedge)

(16-175)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P64324

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516
  recG/mmsA Streptococcus pneumoniae R6

50.388

94.023

0.474
  recG/mmsA Streptococcus pneumoniae R36A

50.388

94.023

0.474
  recG Neisseria meningitidis strain C311

39.82

97.376

0.388

Multiple sequence alignment