Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FE325_RS00055 | Genome accession | NZ_CP040420 |
| Coordinates | 13559..14068 (+) | Length | 169 a.a. |
| NCBI ID | WP_208953363.1 | Uniprot ID | - |
| Organism | Dolosigranulum pigrum strain KPL3065 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 8559..19068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE325_RS00035 (FE325_00035) | - | 9159..9896 (+) | 738 | WP_208953361.1 | TraX family protein | - |
| FE325_RS00040 (FE325_00040) | purB | 9992..11287 (-) | 1296 | WP_208953362.1 | adenylosuccinate lyase | - |
| FE325_RS00045 (FE325_00045) | - | 11549..12886 (-) | 1338 | WP_111951346.1 | FAD-dependent oxidoreductase | - |
| FE325_RS00050 (FE325_00050) | rpsF | 13205..13504 (+) | 300 | WP_004635364.1 | 30S ribosomal protein S6 | - |
| FE325_RS00055 (FE325_00055) | ssb | 13559..14068 (+) | 510 | WP_208953363.1 | single-stranded DNA-binding protein | Machinery gene |
| FE325_RS00060 (FE325_00060) | rpsR | 14095..14334 (+) | 240 | WP_111949546.1 | 30S ribosomal protein S18 | - |
| FE325_RS00065 (FE325_00065) | - | 14484..16475 (+) | 1992 | WP_004635361.1 | DHH family phosphoesterase | - |
| FE325_RS00070 (FE325_00070) | rplI | 16491..16943 (+) | 453 | WP_208953754.1 | 50S ribosomal protein L9 | - |
| FE325_RS00075 (FE325_00075) | dnaB | 17103..18518 (+) | 1416 | WP_208953364.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 19057.47 Da Isoelectric Point: 4.4764
>NTDB_id=364152 FE325_RS00055 WP_208953363.1 13559..14068(+) (ssb) [Dolosigranulum pigrum strain KPL3065]
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTHKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNSFSSNNKFDNDPFDTSNNDDI
DISDDDLPF
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTHKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNSFSSNNKFDNDPFDTSNNDDI
DISDDDLPF
Nucleotide
Download Length: 510 bp
>NTDB_id=364152 FE325_RS00055 WP_208953363.1 13559..14068(+) (ssb) [Dolosigranulum pigrum strain KPL3065]
TTGATTAATAATGTTACGCTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATATACAGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCATTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACACACAAGGGTTCATTAGTTGGTGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGCCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAATCGTCGATCAAATGATGATTACAGTAATGGCGGTTTTAATAACAATCAATCATTCAATCAGTCCCGAA
ATAATCAATCTCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTCGATACAAGTAATAACGATGATATT
GATATATCAGATGATGATTTACCATTTTGA
TTGATTAATAATGTTACGCTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATATACAGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCATTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACACACAAGGGTTCATTAGTTGGTGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGCCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAATCGTCGATCAAATGATGATTACAGTAATGGCGGTTTTAATAACAATCAATCATTCAATCAGTCCCGAA
ATAATCAATCTCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTCGATACAAGTAATAACGATGATATT
GATATATCAGATGATGATTTACCATTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.056 |
100 |
0.58 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.273 |
100 |
0.544 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
62.722 |
0.373 |