Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FE331_RS00070 | Genome accession | NZ_CP040414 |
| Coordinates | 16978..17493 (+) | Length | 171 a.a. |
| NCBI ID | WP_077863029.1 | Uniprot ID | A0A1S8KPC8 |
| Organism | Dolosigranulum pigrum strain KPL3090 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 11978..22493
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE331_RS00055 (FE331_00050) | ltrA | 13111..14406 (-) | 1296 | WP_244304286.1 | group II intron reverse transcriptase/maturase | - |
| FE331_RS00060 (FE331_00055) | - | 14968..16305 (-) | 1338 | WP_208967731.1 | FAD-dependent oxidoreductase | - |
| FE331_RS00065 (FE331_00060) | rpsF | 16624..16923 (+) | 300 | WP_004635364.1 | 30S ribosomal protein S6 | - |
| FE331_RS00070 (FE331_00065) | ssb | 16978..17493 (+) | 516 | WP_077863029.1 | single-stranded DNA-binding protein | Machinery gene |
| FE331_RS00075 (FE331_00070) | rpsR | 17520..17759 (+) | 240 | WP_111949546.1 | 30S ribosomal protein S18 | - |
| FE331_RS00080 (FE331_00075) | - | 17909..19900 (+) | 1992 | WP_208967732.1 | DHH family phosphoesterase | - |
| FE331_RS00085 (FE331_00080) | rplI | 19916..20368 (+) | 453 | WP_077863030.1 | 50S ribosomal protein L9 | - |
| FE331_RS00090 (FE331_00085) | dnaB | 20528..21943 (+) | 1416 | WP_040376800.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19299.70 Da Isoelectric Point: 4.4764
>NTDB_id=364034 FE331_RS00070 WP_077863029.1 16978..17493(+) (ssb) [Dolosigranulum pigrum strain KPL3090]
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTHKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNQNSFSSNNKFDNDPFDTSNND
DIDISDDDLPF
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTHKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNQNSFSSNNKFDNDPFDTSNND
DIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=364034 FE331_RS00070 WP_077863029.1 16978..17493(+) (ssb) [Dolosigranulum pigrum strain KPL3090]
TTGATTAATAATGTTACGCTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATATACTGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCGTTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACACACAAGGGATCATTAGTTGGAGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGTCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAACCGTCGATCAAATGATGATTACAGTAATGGCGGTTTTAATAACAATCAATCATTCAATCAGTCCCGAA
ATAATCAATCTCAGAATCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTCGATACAAGTAATAACGAT
GATATTGATATATCAGATGATGATTTACCATTTTGA
TTGATTAATAATGTTACGCTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATATACTGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCGTTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACACACAAGGGATCATTAGTTGGAGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGTCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAACCGTCGATCAAATGATGATTACAGTAATGGCGGTTTTAATAACAATCAATCATTCAATCAGTCCCGAA
ATAATCAATCTCAGAATCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTCGATACAAGTAATAACGAT
GATATTGATATATCAGATGATGATTTACCATTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.069 |
100 |
0.567 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.247 |
100 |
0.544 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.988 |
0.368 |