Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FE332_RS00055 Genome accession   NZ_CP040413
Coordinates   13558..14073 (+) Length   171 a.a.
NCBI ID   WP_077863029.1    Uniprot ID   A0A1S8KPC8
Organism   Dolosigranulum pigrum strain KPL3246     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8558..19073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE332_RS00035 (FE332_00035) - 9158..9895 (+) 738 WP_111974437.1 TraX family protein -
  FE332_RS00040 (FE332_00040) purB 9991..11286 (-) 1296 WP_208969197.1 adenylosuccinate lyase -
  FE332_RS00045 (FE332_00045) - 11548..12885 (-) 1338 WP_112788477.1 FAD-dependent oxidoreductase -
  FE332_RS00050 (FE332_00050) rpsF 13204..13503 (+) 300 WP_004635364.1 30S ribosomal protein S6 -
  FE332_RS00055 (FE332_00055) ssb 13558..14073 (+) 516 WP_077863029.1 single-stranded DNA-binding protein Machinery gene
  FE332_RS00060 (FE332_00060) rpsR 14100..14339 (+) 240 WP_111949546.1 30S ribosomal protein S18 -
  FE332_RS00065 (FE332_00065) - 14489..16480 (+) 1992 WP_208969198.1 DHH family phosphoesterase -
  FE332_RS00070 (FE332_00070) rplI 16496..16948 (+) 453 WP_111974204.1 50S ribosomal protein L9 -
  FE332_RS00075 (FE332_00075) dnaB 17107..18522 (+) 1416 WP_040376800.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19299.70 Da        Isoelectric Point: 4.4764

>NTDB_id=364013 FE332_RS00055 WP_077863029.1 13558..14073(+) (ssb) [Dolosigranulum pigrum strain KPL3246]
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTHKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNQNSFSSNNKFDNDPFDTSNND
DIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=364013 FE332_RS00055 WP_077863029.1 13558..14073(+) (ssb) [Dolosigranulum pigrum strain KPL3246]
TTGATTAATAATGTTACGTTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATATACTGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCGTTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACACACAAGGGATCATTAGTTGGAGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGTCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAACCGTCGATCAAATGATGATTACAGTAATGGCGGTTTTAATAACAATCAATCATTTAATCAGTCCCGAA
ATAATCAATCTCAGAATCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTCGATACAAGTAATAACGAT
GATATTGATATATCAGATGATGATTTACCATTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.247

100

0.544
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.988

0.368

Multiple sequence alignment