Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FE333_RS00055 | Genome accession | NZ_CP040412 |
| Coordinates | 13560..14075 (+) | Length | 171 a.a. |
| NCBI ID | WP_077863029.1 | Uniprot ID | A0A1S8KPC8 |
| Organism | Dolosigranulum pigrum strain KPL3250 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 8560..19075
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE333_RS00035 (FE333_00035) | - | 9160..9897 (+) | 738 | WP_004635367.1 | TraX family protein | - |
| FE333_RS00040 (FE333_00040) | purB | 9992..11287 (-) | 1296 | WP_208953362.1 | adenylosuccinate lyase | - |
| FE333_RS00045 (FE333_00045) | - | 11548..12885 (-) | 1338 | WP_112788477.1 | FAD-dependent oxidoreductase | - |
| FE333_RS00050 (FE333_00050) | rpsF | 13206..13505 (+) | 300 | WP_004635364.1 | 30S ribosomal protein S6 | - |
| FE333_RS00055 (FE333_00055) | ssb | 13560..14075 (+) | 516 | WP_077863029.1 | single-stranded DNA-binding protein | Machinery gene |
| FE333_RS00060 (FE333_00060) | rpsR | 14102..14341 (+) | 240 | WP_111949546.1 | 30S ribosomal protein S18 | - |
| FE333_RS00065 (FE333_00065) | - | 14491..16482 (+) | 1992 | WP_208957374.1 | DHH family phosphoesterase | - |
| FE333_RS00070 (FE333_00070) | rplI | 16498..16950 (+) | 453 | WP_077863030.1 | 50S ribosomal protein L9 | - |
| FE333_RS00075 (FE333_00075) | dnaB | 17110..18525 (+) | 1416 | WP_208957375.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19299.70 Da Isoelectric Point: 4.4764
>NTDB_id=363991 FE333_RS00055 WP_077863029.1 13560..14075(+) (ssb) [Dolosigranulum pigrum strain KPL3250]
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTHKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNQNSFSSNNKFDNDPFDTSNND
DIDISDDDLPF
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTHKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNQNSFSSNNKFDNDPFDTSNND
DIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=363991 FE333_RS00055 WP_077863029.1 13560..14075(+) (ssb) [Dolosigranulum pigrum strain KPL3250]
TTGATTAATAATGTTACGCTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATACACTGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCGTTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACACACAAGGGTTCATTAGTTGGTGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGCCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAACCGTCGATCAAATGATGATTACAGTAATGGCGGTTTTAATAACAATCAATCATTCAATCAGTCCCGAA
ATAATCAATCTCAGAATCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTCGATACAAGTAATAACGAT
GATATTGATATATCAGATGATGATTTACCATTTTGA
TTGATTAATAATGTTACGCTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATACACTGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCGTTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACACACAAGGGTTCATTAGTTGGTGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGCCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAACCGTCGATCAAATGATGATTACAGTAATGGCGGTTTTAATAACAATCAATCATTCAATCAGTCCCGAA
ATAATCAATCTCAGAATCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTCGATACAAGTAATAACGAT
GATATTGATATATCAGATGATGATTTACCATTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.069 |
100 |
0.567 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.247 |
100 |
0.544 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.988 |
0.368 |