Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FE337_RS00055 | Genome accession | NZ_CP040408 |
| Coordinates | 13561..14076 (+) | Length | 171 a.a. |
| NCBI ID | WP_077863029.1 | Uniprot ID | A0A1S8KPC8 |
| Organism | Dolosigranulum pigrum strain KPL3911 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 8561..19076
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE337_RS00035 (FE337_00035) | - | 9159..9896 (+) | 738 | WP_111974437.1 | TraX family protein | - |
| FE337_RS00040 (FE337_00040) | purB | 9992..11287 (-) | 1296 | WP_208966465.1 | adenylosuccinate lyase | - |
| FE337_RS00045 (FE337_00045) | - | 11549..12886 (-) | 1338 | WP_111951346.1 | FAD-dependent oxidoreductase | - |
| FE337_RS00050 (FE337_00050) | rpsF | 13207..13506 (+) | 300 | WP_004635364.1 | 30S ribosomal protein S6 | - |
| FE337_RS00055 (FE337_00055) | ssb | 13561..14076 (+) | 516 | WP_077863029.1 | single-stranded DNA-binding protein | Machinery gene |
| FE337_RS00060 (FE337_00060) | rpsR | 14103..14342 (+) | 240 | WP_111949546.1 | 30S ribosomal protein S18 | - |
| FE337_RS00065 (FE337_00065) | - | 14651..15937 (-) | 1287 | WP_208959549.1 | ISL3 family transposase | - |
| FE337_RS00070 (FE337_00070) | - | 16196..18187 (+) | 1992 | WP_208966466.1 | DHH family phosphoesterase | - |
| FE337_RS00075 (FE337_00075) | rplI | 18203..18655 (+) | 453 | WP_111951348.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19299.70 Da Isoelectric Point: 4.4764
>NTDB_id=363946 FE337_RS00055 WP_077863029.1 13561..14076(+) (ssb) [Dolosigranulum pigrum strain KPL3911]
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTHKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNQNSFSSNNKFDNDPFDTSNND
DIDISDDDLPF
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTHKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNQNSFSSNNKFDNDPFDTSNND
DIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=363946 FE337_RS00055 WP_077863029.1 13561..14076(+) (ssb) [Dolosigranulum pigrum strain KPL3911]
TTGATTAATAATGTTACGCTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATATACTGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCGTTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACACACAAGGGATCATTAGTTGGAGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGCCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAACCGTCGATCAAATGATGACTACAGTAATGGCGGTTTTAATAACAATCAATCATTCAATCAGTCCCGAA
ATAATCAATCTCAGAATCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTTGATACAAGTAATAACGAT
GATATTGATATATCAGATGATGATTTACCATTTTGA
TTGATTAATAATGTTACGCTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATATACTGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCGTTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACACACAAGGGATCATTAGTTGGAGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGCCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAACCGTCGATCAAATGATGACTACAGTAATGGCGGTTTTAATAACAATCAATCATTCAATCAGTCCCGAA
ATAATCAATCTCAGAATCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTTGATACAAGTAATAACGAT
GATATTGATATATCAGATGATGATTTACCATTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.069 |
100 |
0.567 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.247 |
100 |
0.544 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.988 |
0.368 |