Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | FED53_RS04745 | Genome accession | NZ_CP040367 |
| Coordinates | 799616..799927 (+) | Length | 103 a.a. |
| NCBI ID | WP_025911556.1 | Uniprot ID | - |
| Organism | Priestia flexa isolate 1-2-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 794616..804927
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FED53_RS04715 (FED53_04715) | - | 795341..795514 (-) | 174 | WP_025911564.1 | DUF2759 domain-containing protein | - |
| FED53_RS04720 (FED53_04720) | - | 795711..796343 (+) | 633 | WP_025911563.1 | MBL fold metallo-hydrolase | - |
| FED53_RS04725 (FED53_04725) | - | 796386..796625 (-) | 240 | WP_025911561.1 | DUF2626 domain-containing protein | - |
| FED53_RS04730 (FED53_04730) | - | 796905..797288 (+) | 384 | WP_061784685.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| FED53_RS04735 (FED53_04735) | comGA | 797505..798563 (+) | 1059 | WP_025911559.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FED53_RS04740 (FED53_04740) | comGB | 798544..799602 (+) | 1059 | WP_138116633.1 | competence type IV pilus assembly protein ComGB | - |
| FED53_RS04745 (FED53_04745) | comGC | 799616..799927 (+) | 312 | WP_025911556.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FED53_RS04750 (FED53_04750) | comGD | 799929..800363 (+) | 435 | WP_062686625.1 | competence type IV pilus minor pilin ComGD | - |
| FED53_RS04755 (FED53_04755) | - | 800347..800682 (+) | 336 | WP_025911553.1 | type II secretion system protein | - |
| FED53_RS04760 (FED53_04760) | comGF | 800679..801107 (+) | 429 | WP_025911552.1 | competence type IV pilus minor pilin ComGF | - |
| FED53_RS04765 (FED53_04765) | comGG | 801070..801489 (+) | 420 | WP_061784683.1 | competence type IV pilus minor pilin ComGG | - |
| FED53_RS04770 (FED53_04770) | - | 801568..802167 (-) | 600 | Protein_781 | cupin domain-containing protein | - |
| FED53_RS04775 (FED53_04775) | - | 802312..802503 (+) | 192 | WP_025911548.1 | YqzE family protein | - |
| FED53_RS04780 (FED53_04780) | - | 802541..803362 (-) | 822 | WP_025911547.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11017.88 Da Isoelectric Point: 5.7969
>NTDB_id=363688 FED53_RS04745 WP_025911556.1 799616..799927(+) (comGC) [Priestia flexa isolate 1-2-1]
MLKNEKGFTLIEMLIVMLVITVLLLIMVPNVLKHNAVINNKGCSALVKTVEAQVQVYELENGTKPTLNELESGGYLKEGT
VCPNGSKITIGTDGRVSASDGNS
MLKNEKGFTLIEMLIVMLVITVLLLIMVPNVLKHNAVINNKGCSALVKTVEAQVQVYELENGTKPTLNELESGGYLKEGT
VCPNGSKITIGTDGRVSASDGNS
Nucleotide
Download Length: 312 bp
>NTDB_id=363688 FED53_RS04745 WP_025911556.1 799616..799927(+) (comGC) [Priestia flexa isolate 1-2-1]
ATGTTAAAAAATGAGAAAGGTTTTACTTTAATTGAGATGCTCATTGTTATGTTAGTTATTACAGTGCTATTGCTTATTAT
GGTGCCAAATGTATTAAAGCATAACGCTGTTATTAACAATAAAGGATGTTCGGCTTTAGTGAAAACAGTGGAAGCACAAG
TGCAGGTGTATGAGCTTGAAAACGGAACAAAGCCTACTTTAAACGAGCTTGAAAGCGGAGGATACTTAAAAGAAGGAACG
GTGTGTCCAAATGGTTCGAAAATTACAATAGGTACGGATGGACGCGTATCAGCGAGTGATGGAAACTCGTAA
ATGTTAAAAAATGAGAAAGGTTTTACTTTAATTGAGATGCTCATTGTTATGTTAGTTATTACAGTGCTATTGCTTATTAT
GGTGCCAAATGTATTAAAGCATAACGCTGTTATTAACAATAAAGGATGTTCGGCTTTAGTGAAAACAGTGGAAGCACAAG
TGCAGGTGTATGAGCTTGAAAACGGAACAAAGCCTACTTTAAACGAGCTTGAAAGCGGAGGATACTTAAAAGAAGGAACG
GTGTGTCCAAATGGTTCGAAAATTACAATAGGTACGGATGGACGCGTATCAGCGAGTGATGGAAACTCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
53.684 |
92.233 |
0.495 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
47.5 |
77.67 |
0.369 |
| comGC | Staphylococcus aureus MW2 |
40.86 |
90.291 |
0.369 |
| comGC | Staphylococcus aureus N315 |
40.86 |
90.291 |
0.369 |