Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLO_RS02920 Genome accession   NC_013861
Coordinates   639526..640230 (-) Length   234 a.a.
NCBI ID   WP_012978820.1    Uniprot ID   -
Organism   Legionella longbeachae NSW150     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634526..645230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLO_RS02895 (llo0558) prmC 634618..635424 (-) 807 WP_003632974.1 peptide chain release factor N(5)-glutamine methyltransferase -
  LLO_RS02900 (llo0559) prfA 635417..636505 (-) 1089 WP_012978819.1 peptide chain release factor 1 -
  LLO_RS02905 (llo0560) hemA 636489..637763 (-) 1275 WP_003632972.1 glutamyl-tRNA reductase -
  LLO_RS02910 (llo0561) - 638140..638427 (+) 288 WP_003632971.1 hypothetical protein -
  LLO_RS02915 (llo0562) - 638439..639503 (+) 1065 WP_003632970.1 M50 family metallopeptidase -
  LLO_RS02920 (llo0563) comFC 639526..640230 (-) 705 WP_012978820.1 ComF family protein Machinery gene
  LLO_RS02925 (llo0564) bioC 640268..641125 (+) 858 WP_003632968.1 malonyl-ACP O-methyltransferase BioC -
  LLO_RS02930 (llo0565) - 641312..642103 (-) 792 WP_003632966.1 LirA/MavJ family T4SS effector -
  LLO_RS02935 (llo0566) - 642326..643207 (-) 882 WP_003632965.1 polyprenyl synthetase family protein -
  LLO_RS02940 (llo0567) - 643200..643418 (-) 219 WP_003632964.1 exodeoxyribonuclease VII small subunit -
  LLO_RS02945 (llo0568) radA 643594..644946 (+) 1353 WP_003632963.1 DNA repair protein RadA -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26940.71 Da        Isoelectric Point: 9.4325

>NTDB_id=36368 LLO_RS02920 WP_012978820.1 639526..640230(-) (comFC) [Legionella longbeachae NSW150]
MRQKIWSLTQSLRIYSICILCKQYHNDKMAVCSHCIELMPLLGPGCHHCAYPLPDTQFLVCGHCIKNPPSFDRAFIKYTF
EEPLRTLLHQFKYHNGLYLTSFLSYLIFKSLSSQVEMPQCLIPVPMHPQRIKRRGFNQAAILARSLAKKFKLPCDLFSCQ
KTLNTKPQAGLDEKQRKINLRSAFVTHQLPYQHVAIIDDLLTTGNTANELAYTLKKSGVKQVDVWCCARTIEKH

Nucleotide


Download         Length: 705 bp        

>NTDB_id=36368 LLO_RS02920 WP_012978820.1 639526..640230(-) (comFC) [Legionella longbeachae NSW150]
GTGCGTCAAAAAATATGGAGTTTAACACAAAGTTTACGTATATACTCAATATGTATCTTATGTAAACAATACCACAACGA
TAAAATGGCGGTATGTTCACATTGCATTGAACTCATGCCTTTGTTAGGTCCTGGTTGTCACCATTGTGCTTATCCCTTAC
CAGATACCCAATTTCTCGTCTGTGGGCATTGTATTAAAAATCCACCCTCTTTTGACCGCGCATTCATTAAGTACACTTTT
GAAGAACCCTTGCGTACCCTTTTACACCAATTCAAATATCATAATGGTCTTTATCTTACTTCGTTTCTAAGCTATTTAAT
TTTTAAATCACTATCAAGCCAAGTGGAAATGCCTCAATGTTTGATCCCTGTCCCCATGCATCCACAACGAATTAAACGGC
GTGGATTTAACCAAGCAGCCATCTTGGCTCGTTCTTTAGCTAAAAAATTTAAACTCCCGTGCGATTTATTCAGTTGTCAA
AAAACGCTCAACACCAAACCGCAAGCAGGATTAGATGAAAAACAAAGGAAAATAAATTTACGTTCAGCCTTTGTTACACA
CCAACTACCTTATCAACATGTTGCCATTATCGATGATCTACTAACCACCGGTAATACGGCAAATGAACTGGCGTACACTT
TAAAGAAATCTGGAGTGAAACAGGTGGATGTTTGGTGTTGCGCACGCACCATAGAGAAACACTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

58.974

100

0.59
  comFC Legionella pneumophila strain ERS1305867

59.694

83.761

0.5

Multiple sequence alignment