Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   FED53_RS01700 Genome accession   NZ_CP040367
Coordinates   217341..217748 (+) Length   135 a.a.
NCBI ID   WP_081801858.1    Uniprot ID   -
Organism   Priestia flexa isolate 1-2-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 212341..222748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED53_RS01670 (FED53_01670) - 212386..212691 (+) 306 WP_025909618.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  FED53_RS01675 (FED53_01675) fliS 212739..213164 (+) 426 WP_025909619.1 flagellar export chaperone FliS -
  FED53_RS01680 (FED53_01680) - 213181..214002 (+) 822 WP_025909620.1 flagellin -
  FED53_RS01685 (FED53_01685) - 214084..214521 (+) 438 WP_061786279.1 YaaR family protein -
  FED53_RS01690 (FED53_01690) - 214638..215483 (+) 846 WP_025909622.1 DegV family protein -
  FED53_RS01695 (FED53_01695) comFA 215569..217056 (+) 1488 WP_240046417.1 DEAD/DEAH box helicase Machinery gene
  FED53_RS01700 (FED53_01700) comFC 217341..217748 (+) 408 WP_081801858.1 ComF family protein Machinery gene
  FED53_RS01705 (FED53_01705) - 217806..218207 (+) 402 WP_138116403.1 TIGR03826 family flagellar region protein -
  FED53_RS01710 (FED53_01710) flgM 218421..218678 (+) 258 WP_138116405.1 flagellar biosynthesis anti-sigma factor FlgM -
  FED53_RS01715 (FED53_01715) - 218694..219134 (+) 441 WP_025909627.1 flagellar protein FlgN -
  FED53_RS01720 (FED53_01720) flgK 219155..220669 (+) 1515 WP_138116407.1 flagellar hook-associated protein FlgK -
  FED53_RS01725 (FED53_01725) flgL 220672..221553 (+) 882 WP_062686853.1 flagellar hook-associated protein FlgL -
  FED53_RS01730 (FED53_01730) - 221598..222014 (+) 417 WP_138116409.1 DUF6470 family protein -
  FED53_RS01735 (FED53_01735) fliW 222018..222446 (+) 429 WP_061786545.1 flagellar assembly protein FliW -
  FED53_RS01740 (FED53_01740) csrA 222460..222699 (+) 240 WP_138116411.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15724.06 Da        Isoelectric Point: 6.8722

>NTDB_id=363676 FED53_RS01700 WP_081801858.1 217341..217748(+) (comFC) [Priestia flexa isolate 1-2-1]
MFKYRGDYELHKIFTDDFAQLYKVYSPENPVLVPIPLSKERMYERGFNQAEALASLLPAEVAYPLTRKHTEKQAKKTREE
RLQNHRVFELVDPELVTNRNVILIDDLYTTGVTLHEAALCLKDVAAAIYSFTIYR

Nucleotide


Download         Length: 408 bp        

>NTDB_id=363676 FED53_RS01700 WP_081801858.1 217341..217748(+) (comFC) [Priestia flexa isolate 1-2-1]
TTGTTTAAATACCGAGGTGACTACGAACTTCATAAAATATTTACTGACGATTTCGCTCAGCTTTATAAGGTATATAGTCC
TGAGAACCCCGTACTAGTTCCCATCCCTTTAAGCAAGGAGCGAATGTATGAGCGTGGGTTTAATCAAGCGGAAGCGTTGG
CATCTTTACTCCCGGCAGAGGTAGCTTACCCTCTTACTCGTAAGCATACGGAGAAACAAGCGAAGAAAACGAGAGAAGAA
AGGCTACAAAACCATAGGGTGTTCGAGCTTGTGGATCCAGAGCTGGTTACAAACAGAAACGTCATTTTAATCGATGATTT
GTACACAACGGGCGTTACGCTACACGAAGCAGCGCTTTGTCTAAAAGATGTGGCAGCAGCAATCTATTCTTTTACAATTT
ACCGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(25-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

51.095

100

0.519
  comFC Latilactobacillus sakei subsp. sakei 23K

37.324

100

0.393
  comFC Lactococcus lactis subsp. cremoris KW2

37.5

100

0.378

Multiple sequence alignment