Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FED53_RS01695 Genome accession   NZ_CP040367
Coordinates   215569..217056 (+) Length   495 a.a.
NCBI ID   WP_240046417.1    Uniprot ID   -
Organism   Priestia flexa isolate 1-2-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 210569..222056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED53_RS01670 (FED53_01670) - 212386..212691 (+) 306 WP_025909618.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  FED53_RS01675 (FED53_01675) fliS 212739..213164 (+) 426 WP_025909619.1 flagellar export chaperone FliS -
  FED53_RS01680 (FED53_01680) - 213181..214002 (+) 822 WP_025909620.1 flagellin -
  FED53_RS01685 (FED53_01685) - 214084..214521 (+) 438 WP_061786279.1 YaaR family protein -
  FED53_RS01690 (FED53_01690) - 214638..215483 (+) 846 WP_025909622.1 DegV family protein -
  FED53_RS01695 (FED53_01695) comFA 215569..217056 (+) 1488 WP_240046417.1 DEAD/DEAH box helicase Machinery gene
  FED53_RS01700 (FED53_01700) comFC 217341..217748 (+) 408 WP_081801858.1 ComF family protein Machinery gene
  FED53_RS01705 (FED53_01705) - 217806..218207 (+) 402 WP_138116403.1 TIGR03826 family flagellar region protein -
  FED53_RS01710 (FED53_01710) flgM 218421..218678 (+) 258 WP_138116405.1 flagellar biosynthesis anti-sigma factor FlgM -
  FED53_RS01715 (FED53_01715) - 218694..219134 (+) 441 WP_025909627.1 flagellar protein FlgN -
  FED53_RS01720 (FED53_01720) flgK 219155..220669 (+) 1515 WP_138116407.1 flagellar hook-associated protein FlgK -
  FED53_RS01725 (FED53_01725) flgL 220672..221553 (+) 882 WP_062686853.1 flagellar hook-associated protein FlgL -
  FED53_RS01730 (FED53_01730) - 221598..222014 (+) 417 WP_138116409.1 DUF6470 family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55791.64 Da        Isoelectric Point: 9.0553

>NTDB_id=363675 FED53_RS01695 WP_240046417.1 215569..217056(+) (comFA) [Priestia flexa isolate 1-2-1]
MFLRFILHDNQLVPNGSQEAQAISRLPEWHTPAVNPTFSFNASLQQFLVGKQLLPDELASFSFSTLHEHYEQGYIHYQKS
IVKKDVMTCMRCGNQQQHLFASFHCGRCYSTCAYCRACIGMGRVSECTPLITWKGPPLREVSSPTLTWKGKLSPAQQTAS
SQMVEAVHSKQELLVWAVCGAGKTEVLFEGISKALALGKSVCVATPRTDVVLELHPRLQQAFQELEVVALYGGSADKGKH
SSLILTTTHQLLRYYEAFDVMIIDEVDAFPYSAEPMLQYAAHKARKAESTLIYLTATPSENLKQQVKENKLAAVKIPARY
HRYPIPIPRFVWCGNWQKRLVKKKLPFSISSWIKQRVCDDKQCFVFVPKVKWVQPVVELIQQLTPSVAGVHAEDKERKEK
VKAFREQQYTILVTTTILERGVTVPNIDVAVVGAENEIFTESALVQISGRVGRSANFPTGDVVFFHYGQTVEMKKAKKHM
VDMNDMAKKQGLIQI

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=363675 FED53_RS01695 WP_240046417.1 215569..217056(+) (comFA) [Priestia flexa isolate 1-2-1]
ATGTTTTTGCGATTTATCCTACATGACAATCAGTTAGTACCGAATGGTTCACAGGAAGCGCAGGCCATTTCACGGCTTCC
TGAATGGCATACACCCGCTGTTAACCCTACATTTTCATTTAATGCAAGCCTCCAGCAATTCCTCGTTGGCAAGCAACTAC
TCCCTGATGAACTAGCTTCATTTTCTTTTTCTACTCTTCATGAACATTACGAACAAGGCTATATCCACTATCAAAAGTCA
ATTGTGAAAAAAGACGTGATGACCTGCATGCGCTGTGGAAATCAGCAGCAGCACTTATTTGCTTCGTTTCACTGTGGTCG
CTGTTACAGCACATGTGCGTATTGCCGTGCCTGCATTGGGATGGGGCGGGTATCGGAATGTACGCCTCTTATCACGTGGA
AAGGGCCTCCTTTACGTGAGGTTTCTTCACCAACTCTTACGTGGAAAGGAAAGCTCTCTCCTGCTCAGCAAACGGCTTCT
AGCCAAATGGTAGAAGCCGTACATTCAAAGCAAGAGCTGCTCGTGTGGGCCGTTTGTGGAGCTGGAAAAACGGAAGTTCT
CTTTGAAGGTATTTCAAAAGCGCTTGCTTTGGGTAAATCGGTATGCGTCGCCACGCCGAGAACGGACGTAGTCCTGGAGC
TTCATCCAAGGCTTCAACAAGCGTTTCAAGAGTTGGAAGTAGTGGCTCTTTACGGCGGAAGTGCTGATAAAGGGAAGCAT
TCTTCTCTGATCCTCACAACCACGCATCAGCTTTTGCGTTACTATGAAGCATTTGACGTCATGATCATTGACGAAGTAGA
CGCATTTCCTTATTCAGCAGAACCAATGTTGCAATATGCTGCCCACAAAGCTCGTAAAGCAGAATCAACCCTTATTTACT
TAACAGCAACTCCCAGTGAAAATCTTAAGCAACAGGTTAAAGAAAATAAGCTAGCAGCTGTCAAAATACCGGCTCGCTAT
CACCGCTATCCCATTCCGATACCTCGTTTTGTATGGTGTGGCAACTGGCAGAAGAGGCTTGTTAAAAAGAAGTTACCTTT
CTCTATATCAAGCTGGATCAAGCAGCGAGTGTGTGATGATAAGCAGTGCTTTGTGTTTGTACCAAAGGTCAAATGGGTTC
AGCCCGTTGTAGAACTCATTCAACAGCTAACGCCAAGCGTGGCTGGGGTGCACGCAGAAGATAAGGAGCGAAAAGAAAAG
GTAAAAGCATTTCGTGAGCAGCAGTATACCATTTTGGTTACAACAACCATTTTAGAACGAGGGGTGACTGTCCCTAATAT
TGATGTCGCTGTAGTAGGTGCTGAAAATGAAATTTTCACTGAAAGCGCACTTGTGCAAATTTCAGGCCGAGTTGGTAGAA
GCGCAAACTTTCCAACAGGAGACGTGGTCTTCTTTCATTATGGGCAAACGGTTGAAATGAAAAAAGCGAAAAAGCATATG
GTAGATATGAACGATATGGCAAAAAAACAAGGTCTAATTCAGATATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(151-299)

Helicase conserved C-terminal domain (Helicase_C)

(359-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.298

92.323

0.483

Multiple sequence alignment