Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SMI_RS07655 Genome accession   NC_013853
Coordinates   1522950..1524908 (-) Length   652 a.a.
NCBI ID   WP_000748895.1    Uniprot ID   D3HA52
Organism   Streptococcus mitis B6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1517950..1529908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS07630 (smi_1505) - 1518207..1518659 (-) 453 WP_012972557.1 hypothetical protein -
  SMI_RS07635 (smi_1506) - 1518708..1519349 (-) 642 WP_001098291.1 Abi family protein -
  SMI_RS07640 (smi_1507) - 1519639..1520805 (-) 1167 WP_000521356.1 MalY/PatB family protein -
  SMI_RS07645 (smi_1508) - 1520813..1521907 (-) 1095 WP_000031976.1 cystathionine gamma-synthase -
  SMI_RS07650 (smi_1509) - 1522178..1522633 (-) 456 WP_000500941.1 hypothetical protein -
  SMI_RS07655 (smi_1510) amiA 1522950..1524908 (-) 1959 WP_000748895.1 peptide ABC transporter substrate-binding protein Regulator
  SMI_RS07660 (smi_1511) - 1525103..1526725 (-) 1623 WP_000064185.1 putative polysaccharide biosynthesis protein -
  SMI_RS07665 (smi_1512) - 1526831..1528276 (+) 1446 WP_000590307.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  SMI_RS07670 (smi_1513) - 1528322..1528513 (-) 192 WP_000051182.1 CsbD family protein -
  SMI_RS07675 (smi_1514) - 1528615..1529265 (-) 651 WP_000614471.1 DUF1803 domain-containing protein -
  SMI_RS07680 (smi_1515) - 1529249..1529743 (-) 495 WP_000578394.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72955.24 Da        Isoelectric Point: 4.7533

>NTDB_id=36326 SMI_RS07655 WP_000748895.1 1522950..1524908(-) (amiA) [Streptococcus mitis B6]
MKKSKSKYLTLAGVVLSAGFLLSACSNSSSAAKTYSYIYASDPTSLNYLKENRATVLDVVTNFVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTADGDEYAPVTAQDFVTGLKYAADKKSEALYLVQESVAGLDDYINGKTSDFSTVGV
KALDDQTVQYTLNQPEPYWNSKTTSSILFPVNEEFLNSKGDDFGKIDPADILYNGPFLFKAFTSKSVMEYKKNPNYWDAK
NVFVDDVKLTYFDGSDQDSLARNFTEGGYSYARLFPNNSSFEAIKEKYKDNIIYSMQDATSYYYNFNLDRKSYKYTSKIS
DAEKKSTQEAVLNKSFRQAINFAYDRTAYGAQSQGEDGATKILRNLLVPPTFVSADGKNFGEMVASKVVNYGKEWQDMKF
DDAQDPYYNVDKAKEAFGKAKKELEAKGVQFPIHLDMPVDQTVKRGVQEASSFKQSIESVLGADNVVIDIQMLGPDEMES
IGYRAETAAQKDYDLYNGGWSADYLDPSSYLDTLSLSSGGSLQNLGIEPGQPNDKTKAAGIDTYTKMVEEAGKEQDLSKR
YDKYADAQAWLVDSSLAIPNLSLGGTPTLRKTVPFSSPYSLAGNKGVESYKYLKLQDKAVTKDEYEKAKEKWMKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=36326 SMI_RS07655 WP_000748895.1 1522950..1524908(-) (amiA) [Streptococcus mitis B6]
ATGAAAAAGTCTAAATCCAAGTATCTGACACTTGCAGGTGTCGTTTTAAGTGCAGGTTTTCTACTAAGTGCCTGCAGTAA
TTCTTCTAGTGCAGCTAAAACGTATAGTTATATTTACGCTTCTGATCCAACTAGCTTAAACTATCTTAAAGAAAATCGTG
CGACTGTACTTGACGTTGTTACAAACTTTGTAGATGGTCTCATGGAAAATGATCAGTATGGGAACTATGTGCCATCCTTG
GCAGAAGATTGGACTGTTTCTCAGGATGGTTTGACCTATACCTACAAACTGCGGAAAGATGCTAAATGGTATACTGCAGA
TGGAGATGAATATGCTCCTGTTACTGCCCAAGATTTTGTCACTGGTTTGAAATATGCGGCTGATAAAAAATCAGAAGCCT
TGTACTTAGTGCAAGAATCCGTCGCAGGTTTGGATGATTACATTAACGGTAAAACAAGCGACTTTTCAACTGTCGGTGTT
AAGGCTCTTGATGACCAAACCGTTCAATATACCTTGAACCAACCAGAACCTTACTGGAATTCAAAAACAACTTCAAGTAT
TCTCTTCCCAGTTAACGAGGAATTTTTGAATTCAAAAGGAGATGATTTTGGTAAAATTGATCCTGCAGATATCTTGTACA
ACGGACCATTCTTATTCAAGGCTTTCACTTCAAAATCTGTTATGGAATATAAAAAGAATCCAAACTACTGGGATGCAAAA
AATGTCTTTGTAGATGATGTGAAGTTGACTTATTTTGATGGTAGTGATCAAGATTCCCTTGCTCGCAACTTTACTGAGGG
AGGGTATAGTTATGCTAGGCTCTTCCCAAATAATTCAAGTTTTGAAGCTATTAAAGAAAAATACAAAGATAATATCATCT
ACAGTATGCAAGATGCGACTTCTTACTATTACAATTTTAACCTAGACAGAAAATCTTATAAATACACTTCAAAAATAAGC
GATGCTGAGAAAAAATCAACTCAGGAAGCTGTTCTAAATAAGAGCTTCCGTCAAGCTATTAATTTTGCCTATGATCGTAC
AGCCTATGGAGCTCAATCTCAGGGTGAAGATGGGGCAACGAAGATTCTCAGAAACCTTTTGGTTCCACCAACCTTTGTCT
CAGCTGATGGTAAGAACTTTGGTGAAATGGTAGCTTCAAAAGTTGTCAATTATGGTAAAGAATGGCAAGATATGAAATTT
GATGATGCTCAGGATCCGTATTACAATGTTGACAAAGCCAAAGAAGCCTTTGGAAAAGCTAAAAAAGAATTGGAAGCTAA
AGGGGTTCAATTCCCAATCCACTTGGATATGCCAGTTGACCAAACTGTTAAAAGAGGTGTCCAAGAAGCTAGTTCATTCA
AACAGTCTATCGAATCTGTCTTGGGGGCTGATAATGTAGTTATTGACATCCAAATGTTAGGCCCTGATGAAATGGAAAGC
ATTGGTTATAGAGCTGAGACAGCTGCGCAAAAAGACTATGACCTCTATAATGGTGGTTGGAGTGCAGACTATCTAGATCC
TTCTAGCTATCTTGATACACTTAGCTTATCAAGCGGTGGTTCTCTCCAAAATCTAGGAATTGAACCTGGTCAACCAAATG
ATAAGACGAAAGCAGCTGGTATTGATACTTATACTAAGATGGTTGAAGAAGCTGGTAAAGAACAAGATTTGTCTAAACGT
TACGATAAGTATGCTGATGCTCAAGCGTGGTTGGTGGATAGTTCTCTAGCGATTCCAAATCTTTCACTGGGTGGAACACC
AACATTGAGAAAAACTGTTCCTTTCTCATCACCTTATTCATTGGCTGGTAATAAAGGGGTCGAATCATATAAATACCTCA
AATTACAAGATAAGGCAGTCACAAAAGACGAATATGAAAAAGCCAAAGAAAAATGGATGAAAGAAAAAGAAGAATCTAAT
AAAAAAGCCCAAGAAGAGTTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HA52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.03

100

0.554
  amiA3 Streptococcus thermophilus LMG 18311

54.795

100

0.552
  amiA3 Streptococcus thermophilus LMD-9

54.49

100

0.549

Multiple sequence alignment