Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SMI_RS01515 Genome accession   NC_013853
Coordinates   285870..287834 (+) Length   654 a.a.
NCBI ID   WP_000748903.1    Uniprot ID   D3H6S1
Organism   Streptococcus mitis B6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 280870..292834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS01490 (smi_0286) - 281598..282989 (+) 1392 WP_000452107.1 Cof-type HAD-IIB family hydrolase -
  SMI_RS10910 - 282986..283108 (+) 123 WP_000693002.1 hypothetical protein -
  SMI_RS01495 (smi_0287) - 283167..283619 (-) 453 WP_000079151.1 universal stress protein -
  SMI_RS01500 (smi_0288) - 283780..284082 (+) 303 WP_164925505.1 hypothetical protein -
  SMI_RS01505 (smi_0289) - 284238..285452 (+) 1215 WP_000666463.1 pyridoxal phosphate-dependent aminotransferase -
  SMI_RS01510 (smi_0290) rpmH 285597..285731 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  SMI_RS01515 (smi_0291) amiA 285870..287834 (+) 1965 WP_000748903.1 peptide ABC transporter substrate-binding protein Regulator
  SMI_RS01520 (smi_0292) - 287926..289770 (-) 1845 WP_000494369.1 APC family permease -
  SMI_RS01525 (smi_0293) - 289925..290695 (+) 771 WP_000575604.1 TatD family hydrolase -
  SMI_RS01530 (smi_0294) rnmV 290698..291264 (+) 567 WP_000660021.1 ribonuclease M5 -
  SMI_RS01535 (smi_0295) rsmA 291329..292201 (+) 873 WP_001216839.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72987.08 Da        Isoelectric Point: 4.7104

>NTDB_id=36294 SMI_RS01515 WP_000748903.1 285870..287834(+) (amiA) [Streptococcus mitis B6]
MKKSKVMLFGAMALTAGLALAACGSSQSSNADKTYSYIFVSNPDTLDYITSTRDSTSSITANLIDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGKSSDFGTVGV
KAVDDYTLQYTLNQPETYWNSKTTASILNPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFSSKSLIEFDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSIARGFLDGNYTDGRIFPTSSVFAELKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTVTPSNFVQVGDKNFGDIVNEKIVNYGKDWANINL
NDGKQAFLNPDKAKEKFAKAKESLQAQGVTFPIHLDMPVDQTAKLDVQQAGSFKQTVEETLGKENVVIDVIQLSPDEKDQ
ATYFADTAEQKDYDIDISGWGGDYSDPKTYLAILDPETGSQLKNMGLSEGKDKEVKDKIGLADYKKLLDQADAEITDTQA
RYEKYAEAQAWLTDSALFLPVQSGGANPIFRKTVPFTGPFSFVGNKGNADNYKYVELQKEPVTAKQYQELYEKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=36294 SMI_RS01515 WP_000748903.1 285870..287834(+) (amiA) [Streptococcus mitis B6]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTATGGCTTTGACAGCAGGTCTAGCTCTAGCGGCATGCGGGTCATCCCA
ATCAAGTAATGCAGACAAGACTTACTCTTATATCTTTGTCAGCAACCCTGATACCTTGGATTACATTACCTCTACACGAG
ATTCTACATCTAGTATCACAGCCAACTTGATTGATGGATTGTTGGAAAATGACCAGTATGGCAATCTCATCCCATCTATG
GCTGAGTCATGGACAGTGTCAAAAGATGGCTTGACTTATACTTATAAGATCCGTCAGGGAGCTAAATGGTACACTTCTGA
AGGAGAAGAGTATGCAGATGTAACGGCTCATGACTTTGTGACTGGTCTCAAGTATGCGGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTACAAGACTCTATCAAGGGTCTAGCAGACTATGTTGAAGGGAAATCATCTGATTTTGGAACTGTTGGTGTT
AAGGCAGTGGATGATTACACTCTACAATACACTCTCAACCAACCTGAGACTTATTGGAACTCTAAAACAACAGCAAGTAT
CCTTAATCCTGTAAATGAAGCCTTCTTGAAGTCTAAGGGAGATGACTTTGGAAGCGTAACACCATCAAGTATCTTGTCAA
ATGGTCCTTACTTGTTTAAATCTTTCTCATCAAAATCTTTGATTGAGTTTGATAAAAACCCTAATTACTGGGATAAGGAC
AATGTTAAAATTGAGAAAGTGAAACTTTCTTTCTTTGACGGTTCTGACCAAGACAGCATTGCTAGAGGTTTCTTGGATGG
TAACTATACAGACGGCCGTATTTTCCCAACCAGTTCAGTCTTTGCTGAACTTAAGAAGGGCAATGAGGACAAGATTACCT
ACACACCACAAAACTCAGTTACTTTCTACTATCTTTTCAACGTCAATCGTCAAAGTTACAAGCAGACTATGAAACAGTCT
GATAAGGAAAAGACAGATTCACGCGCAGCTATGCAGAATAAAGATTTCCGTCAGGCCATCAACTTTGCCTTTGACCGTCA
TGCCTATGCAGCACAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAACACAGTTACACCAAGTAACTTTGTCC
AAGTTGGCGATAAGAACTTTGGTGACATTGTCAATGAGAAAATTGTCAACTACGGTAAAGATTGGGCAAATATTAACCTA
AACGATGGTAAGCAAGCCTTCTTGAACCCTGACAAGGCCAAAGAGAAATTTGCTAAGGCCAAAGAAAGTCTGCAAGCTCA
AGGAGTAACCTTCCCAATTCATTTGGATATGCCAGTTGACCAGACTGCTAAGTTGGATGTGCAACAGGCTGGATCTTTCA
AACAAACAGTGGAAGAAACTCTTGGTAAGGAGAATGTGGTTATTGATGTTATCCAACTTTCTCCAGATGAAAAAGACCAG
GCAACCTACTTTGCAGATACAGCAGAACAAAAAGACTATGATATTGACATCTCAGGATGGGGTGGAGACTACTCAGATCC
TAAGACTTACCTAGCCATCCTTGATCCAGAGACAGGTTCTCAGTTGAAAAACATGGGCTTGTCTGAAGGAAAAGACAAGG
AAGTTAAGGACAAGATTGGTCTTGCTGACTATAAGAAACTCTTGGATCAGGCTGATGCGGAAATCACAGATACTCAAGCT
CGCTATGAAAAATATGCTGAAGCCCAAGCTTGGTTGACAGATAGCGCCCTCTTCCTACCAGTTCAAAGTGGTGGAGCTAA
TCCAATCTTCCGTAAGACTGTACCGTTTACAGGCCCATTCTCATTCGTTGGGAATAAAGGAAATGCTGACAACTACAAAT
ATGTTGAATTGCAAAAAGAGCCAGTAACCGCTAAACAGTACCAAGAACTCTATGAAAAATGGCTGAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAACCATATTCAATGA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3H6S1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.863

100

0.552
  amiA3 Streptococcus thermophilus LMD-9

54.711

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.407

100

0.547

Multiple sequence alignment