Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ELJP6_RS01400 | Genome accession | NZ_CP040256 |
| Coordinates | 301297..301824 (+) | Length | 175 a.a. |
| NCBI ID | WP_014168221.1 | Uniprot ID | - |
| Organism | Enterobacter ludwigii strain JP6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 296297..306824
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELJP6_RS01380 (ELJP6_01385) | aphA | 296620..297333 (+) | 714 | WP_113656989.1 | acid phosphatase AphA | - |
| ELJP6_RS01385 (ELJP6_01390) | - | 297447..297863 (+) | 417 | WP_014168218.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ELJP6_RS01390 (ELJP6_01395) | - | 297866..298219 (+) | 354 | WP_014168219.1 | MmcQ/YjbR family DNA-binding protein | - |
| ELJP6_RS01395 (ELJP6_01400) | uvrA | 298223..301045 (-) | 2823 | WP_014168220.1 | excinuclease ABC subunit UvrA | - |
| ELJP6_RS01400 (ELJP6_01405) | ssb | 301297..301824 (+) | 528 | WP_014168221.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ELJP6_RS01405 (ELJP6_01410) | - | 301888..302170 (-) | 283 | Protein_268 | YjcB family protein | - |
| ELJP6_RS01410 (ELJP6_01415) | - | 302660..304060 (+) | 1401 | WP_050737727.1 | sensor domain-containing diguanylate cyclase | - |
| ELJP6_RS01415 (ELJP6_01420) | - | 304400..305965 (+) | 1566 | WP_025206387.1 | EAL domain-containing protein | - |
| ELJP6_RS01420 (ELJP6_01425) | soxS | 305972..306298 (-) | 327 | WP_013095071.1 | superoxide response transcriptional regulator SoxS | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18735.76 Da Isoelectric Point: 5.2456
>NTDB_id=362880 ELJP6_RS01400 WP_014168221.1 301297..301824(+) (ssb) [Enterobacter ludwigii strain JP6]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=362880 ELJP6_RS01400 WP_014168221.1 301297..301824(+) (ssb) [Enterobacter ludwigii strain JP6]
ATGGCCAGCAGAGGCGTAAATAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCACAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCAGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCTTTCTGA
ATGGCCAGCAGAGGCGTAAATAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCACAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCAGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCTTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.111 |
100 |
0.783 |
| ssb | Glaesserella parasuis strain SC1401 |
56.757 |
100 |
0.6 |
| ssb | Neisseria meningitidis MC58 |
46.629 |
100 |
0.474 |
| ssb | Neisseria gonorrhoeae MS11 |
46.629 |
100 |
0.474 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35 |
100 |
0.36 |