Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FEF05_RS11580 Genome accession   NZ_CP040243
Coordinates   2281951..2282589 (+) Length   212 a.a.
NCBI ID   WP_005711167.1    Uniprot ID   B8F752
Organism   Glaesserella parasuis strain HPS-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2276951..2287589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS11535 (FEF05_11540) rplP 2276985..2277395 (-) 411 WP_006249357.1 50S ribosomal protein L16 -
  FEF05_RS11540 (FEF05_11545) rpsC 2277408..2278112 (-) 705 WP_010786465.1 30S ribosomal protein S3 -
  FEF05_RS11545 (FEF05_11550) rplV 2278130..2278462 (-) 333 WP_149351263.1 50S ribosomal protein L22 -
  FEF05_RS11550 (FEF05_11555) rpsS 2278473..2278748 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  FEF05_RS11555 (FEF05_11560) rplB 2278777..2279598 (-) 822 WP_005711173.1 50S ribosomal protein L2 -
  FEF05_RS11560 (FEF05_11565) rplW 2279619..2279924 (-) 306 WP_005818317.1 50S ribosomal protein L23 -
  FEF05_RS11565 (FEF05_11570) rplD 2279921..2280523 (-) 603 WP_005711169.1 50S ribosomal protein L4 -
  FEF05_RS11570 (FEF05_11575) rplC 2280539..2281165 (-) 627 WP_149351264.1 50S ribosomal protein L3 -
  FEF05_RS11575 (FEF05_11580) rpsJ 2281182..2281493 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  FEF05_RS11580 (FEF05_11585) sxy/tfoX 2281951..2282589 (+) 639 WP_005711167.1 TfoX/Sxy family protein Regulator
  FEF05_RS11585 (FEF05_11590) fumC 2282736..2284130 (+) 1395 WP_010786461.1 class II fumarate hydratase -
  FEF05_RS11590 (FEF05_11595) - 2284312..2285490 (+) 1179 WP_010786460.1 ATP-grasp domain-containing protein -
  FEF05_RS11595 (FEF05_11600) - 2285561..2286532 (-) 972 WP_005714915.1 IS110 family transposase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24705.70 Da        Isoelectric Point: 9.4406

>NTDB_id=362849 FEF05_RS11580 WP_005711167.1 2281951..2282589(+) (sxy/tfoX) [Glaesserella parasuis strain HPS-1]
MKYIDAKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAKNLSLLLDSQTGINLKSF
YLIPPDLLNDLQQVSHWVVESVKDILHTKQNQYMEKKKCIRTLPNMTIQLERTLKKLGVYSIDDLVDRGEIDIFVNLLKI
GVDADQALLFRLHGAINRQYIYTISDKTKQNLLNDADNALYAAGLRKRFNTR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=362849 FEF05_RS11580 WP_005711167.1 2281951..2282589(+) (sxy/tfoX) [Glaesserella parasuis strain HPS-1]
ATGAAATACATTGATGCAAAAACACAACATATCCGTAATCTTCTTTACCCAATCATTGGCGAAACGAAAGCAAAAACCTA
TTTTTCCTATTATGGAATAATGAAAGATAAAGCTATGTTTGCTTTATACAAAGATGATAAATTCTATCTACACATACCAA
ATCATTGCTTAGAGGAAAACATAGCTAAAAATTTATCTCTTCTTCTCGACTCTCAGACTGGCATTAATCTAAAATCCTTC
TATTTAATCCCTCCCGATCTACTTAATGACTTACAACAAGTTTCACATTGGGTCGTCGAAAGTGTGAAAGATATTCTCCA
TACGAAACAAAATCAGTATATGGAAAAGAAAAAATGTATTCGGACGCTGCCGAATATGACAATACAACTCGAAAGGACAT
TAAAAAAACTAGGTGTCTACTCTATTGATGATTTAGTAGATAGGGGCGAGATTGATATTTTCGTCAACCTCCTTAAAATA
GGTGTTGATGCTGATCAAGCTTTATTATTTCGACTTCATGGAGCAATAAATCGACAATATATCTATACGATTTCAGACAA
AACAAAGCAGAATTTACTCAATGATGCAGATAATGCCTTGTATGCTGCCGGACTCCGAAAGCGATTTAATACTAGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-103)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

73.239

100

0.736
  sxy/tfoX Actinobacillus suis H91-0380

43.128

99.528

0.429
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

38.647

97.642

0.377

Multiple sequence alignment