Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FD735_RS03075 Genome accession   NZ_CP040231
Coordinates   554171..556129 (+) Length   652 a.a.
NCBI ID   WP_044020476.1    Uniprot ID   A0A5B7Y4R0
Organism   Streptococcus sp. 1643     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 549171..561129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS03050 (FD735_03050) - 549315..549827 (+) 513 WP_139658440.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  FD735_RS03055 (FD735_03055) - 549811..550461 (+) 651 WP_139658441.1 DUF1803 domain-containing protein -
  FD735_RS03060 (FD735_03060) - 550563..550763 (+) 201 WP_000051179.1 CsbD family protein -
  FD735_RS03065 (FD735_03065) - 550795..552240 (-) 1446 WP_139658442.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  FD735_RS03070 (FD735_03070) - 552346..553968 (+) 1623 WP_000064205.1 polysaccharide biosynthesis protein -
  FD735_RS03075 (FD735_03075) amiA 554171..556129 (+) 1959 WP_044020476.1 peptide ABC transporter substrate-binding protein Regulator
  FD735_RS03080 (FD735_03080) - 556275..557369 (+) 1095 WP_000031946.1 cystathionine gamma-synthase -
  FD735_RS03085 (FD735_03085) - 557377..558543 (+) 1167 WP_000521334.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72819.97 Da        Isoelectric Point: 4.7680

>NTDB_id=362638 FD735_RS03075 WP_044020476.1 554171..556129(+) (amiA) [Streptococcus sp. 1643]
MKKSKAKYLTLASVVLSAGILLSACGNSSSATKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDEK
NVFVDGVKLAYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQISTDEFNN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNLGLEPGEVNDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYAEIQAWLVDSALAIPNVSQGGTPTLRKTVPFSSPFSQAGNKGVESYKYLKLQDKTVTADEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=362638 FD735_RS03075 WP_044020476.1 554171..556129(+) (amiA) [Streptococcus sp. 1643]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCAGGTATCTTACTGAGCGCATGTGGAAA
TTCAAGTAGCGCTACTAAAACATATAACTATGTTTATTCGAGCGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAATGACATCGTGACCAATTTGGTGGATGGGTTGATGGAAAATGACCAATACGGTAACTATGTTCCATCGTTG
GCAGAGGATTGGACTGTTTCTCAGGACGGTTTGACCTATACTTACAAATTGCGTAAGGATGCAAAATGGTATACTTATGA
GGGTGAAGAATACGCCCCTGTAACGGCCCAAGACTTTGTGACAGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACCTGGTTCAAGACTCGGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTT
AAGGCGATTGACGACCAAACGGTTCAGTACACTTTGACACGTCCAGAATCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGATTTCTTAAAATCAAAAGGGGATGACTTTGGTAAGGTAGACCCTTCTAGTATTTTGTACA
ATGGACCTTTCTTAATGAAATCTTTTGTTTCAAAATCTGTTATCGAATTCAAGAAAAATCCCAACTACTGGGATGAAAAA
AATGTCTTTGTGGATGGTGTGAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTAGCACGTAACTTTGTAGAAGG
AGTCTATAGCTACGCGCGTCTCTATCCAAATAGCTCAAGCTTTGAAGGCATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAATGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAACTTCACTTCTAAGTCCTCA
GATATCGAAAAGAAATCAACCCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
TGCCTATGGAGCACAATCTCAAGGGGAGGACGGAGCAACGAAGATTATTCGTAATTTGGTTGTACCTCCAACATTTGTAA
GTATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCGGACGCGCAAGATCCATACTACAATCCTGATAAAGCTAAGGCTAAATTTGCGGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTATCAGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGTTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAGATATCAACAGATGAGTTTAACAAC
TCTAGCTACCTCGCTCAAACTGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCGGACTACTTGGATCC
ATCAAGCTATCTAGATATCCTAAATGTCAATAACGGCGGTATGTTGCAAAATCTTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTAGAAGAAGCGAACAAGGAGCAAGATCCAGCAAAACGT
TATGAAAAATATGCTGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTCAGGGTGGGACACC
GACCTTGAGAAAGACAGTTCCATTCTCATCACCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTATCTCA
AGTTACAAGATAAGACTGTAACGGCTGATGAGTATGAAAAAGCTAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7Y4R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.231

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

55.69

100

0.563
  amiA3 Streptococcus thermophilus LMD-9

55.387

100

0.56

Multiple sequence alignment