Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   E3S88_RS06885 Genome accession   NZ_CP047792
Coordinates   1419946..1420935 (-) Length   329 a.a.
NCBI ID   WP_000219064.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_794     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414946..1425935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S88_RS06870 (E3S88_06870) acsA 1416147..1417853 (-) 1707 WP_000862084.1 acetate--CoA ligase -
  E3S88_RS06875 (E3S88_06875) - 1418022..1418654 (+) 633 WP_124780501.1 N-acetyltransferase -
  E3S88_RS06880 (E3S88_06880) - 1418679..1419848 (+) 1170 WP_124780499.1 acetoin utilization protein AcuC -
  E3S88_RS06885 (E3S88_06885) ccpA 1419946..1420935 (-) 990 WP_000219064.1 catabolite control protein A Regulator
  E3S88_RS06890 (E3S88_06890) - 1421008..1421121 (-) 114 WP_001788994.1 hypothetical protein -
  E3S88_RS06895 (E3S88_06895) - 1421474..1422565 (-) 1092 WP_000066378.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  E3S88_RS06900 (E3S88_06900) - 1423020..1423103 (-) 84 WP_124780655.1 hypothetical protein -
  E3S88_RS06905 (E3S88_06905) - 1423259..1424452 (-) 1194 WP_124780495.1 hypothetical protein -
  E3S88_RS06910 (E3S88_06910) - 1424526..1425017 (-) 492 WP_000383814.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36002.20 Da        Isoelectric Point: 5.7655

>NTDB_id=362407 E3S88_RS06885 WP_000219064.1 1419946..1420935(-) (ccpA) [Staphylococcus aureus strain UP_794]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=362407 E3S88_RS06885 WP_000219064.1 1419946..1420935(-) (ccpA) [Staphylococcus aureus strain UP_794]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCACAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATCCTGAAAAAGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAAGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGTGCTAAATCATTTGCTTTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTTTTAGCAGGTTTAACTGAAGTGTTAAATAAAAATGGCCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCTAAAATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCGAATGTAGTTTTACCACAC
AGAATTGAATATCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

47.879

100

0.48
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462

Multiple sequence alignment