Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FAY22_RS06075 Genome accession   NZ_CP040128
Coordinates   1290380..1291177 (-) Length   265 a.a.
NCBI ID   WP_146329380.1    Uniprot ID   A0A5B8N6P9
Organism   Noviherbaspirillum sp. UKPF54     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1285380..1296177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY22_RS06050 (FAY22_06050) - 1285868..1286515 (+) 648 WP_146329375.1 glutathione S-transferase family protein -
  FAY22_RS06055 (FAY22_06055) - 1286547..1287701 (-) 1155 WP_146329376.1 HD-GYP domain-containing protein -
  FAY22_RS06060 (FAY22_06060) - 1287857..1289026 (-) 1170 WP_146329377.1 pyridoxal phosphate-dependent aminotransferase -
  FAY22_RS06065 (FAY22_06065) - 1289051..1289515 (-) 465 WP_146329378.1 putative toxin-antitoxin system toxin component, PIN family -
  FAY22_RS06070 (FAY22_06070) yaaA 1289543..1290319 (+) 777 WP_146329379.1 peroxide stress protein YaaA -
  FAY22_RS06075 (FAY22_06075) comL 1290380..1291177 (-) 798 WP_146329380.1 outer membrane protein assembly factor BamD Machinery gene
  FAY22_RS06080 (FAY22_06080) - 1291236..1292258 (+) 1023 WP_371417391.1 RluA family pseudouridine synthase -
  FAY22_RS06085 (FAY22_06085) pgeF 1292262..1293020 (+) 759 WP_146329382.1 peptidoglycan editing factor PgeF -
  FAY22_RS06090 (FAY22_06090) phaC 1293364..1295073 (+) 1710 WP_146329383.1 class I poly(R)-hydroxyalkanoic acid synthase -
  FAY22_RS06095 (FAY22_06095) phaR 1295310..1295882 (+) 573 WP_146329384.1 polyhydroxyalkanoate synthesis repressor PhaR -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 30253.15 Da        Isoelectric Point: 7.4067

>NTDB_id=362390 FAY22_RS06075 WP_146329380.1 1290380..1291177(-) (comL) [Noviherbaspirillum sp. UKPF54]
MQKKSLKFAALVLAASLSGCGLLPEKVDETKDWPAAKLYSEARDELSSGNYEKAIQYFEKLESRYPFGTYAQQAQMEIAY
ANYRQGDQAQALAAVERFIKLHPNHPNVDYMYYLRGLINFNDNTGFFDFLSKQDPSERDPKAAHEAFDSFKQLAERFPDS
KYAKDAIARMKYLVNAMARHEVHVASYYYRRGAYVAAANRAQVAVNEYRDAPVIEEALTIMVKSYDALGLTDLRDDTERV
LKANFPNSAFFKGTVAQSGPWWKIW

Nucleotide


Download         Length: 798 bp        

>NTDB_id=362390 FAY22_RS06075 WP_146329380.1 1290380..1291177(-) (comL) [Noviherbaspirillum sp. UKPF54]
ATGCAAAAAAAATCCCTGAAGTTCGCTGCCCTTGTTCTCGCCGCCTCGCTGTCGGGTTGCGGTCTGCTTCCCGAAAAAGT
GGATGAGACCAAGGATTGGCCAGCCGCCAAATTATACTCGGAGGCTCGCGACGAATTATCGAGCGGGAATTACGAAAAAG
CGATCCAGTACTTCGAAAAGCTGGAGTCGCGTTATCCATTCGGCACCTATGCGCAGCAGGCGCAGATGGAAATCGCCTAC
GCCAATTACCGCCAGGGCGACCAGGCGCAGGCGCTGGCCGCGGTGGAGCGCTTCATCAAGCTGCACCCGAATCATCCGAA
CGTCGATTACATGTATTACCTGCGCGGACTGATCAACTTTAACGACAACACCGGCTTCTTCGATTTCCTGTCGAAGCAGG
ATCCGAGCGAACGCGATCCGAAAGCCGCGCATGAAGCCTTCGACTCCTTCAAGCAGCTGGCCGAGCGTTTCCCGGACAGC
AAATACGCCAAGGATGCGATCGCCCGCATGAAGTACCTGGTCAATGCCATGGCACGCCACGAAGTGCATGTAGCAAGTTA
CTACTATCGCCGCGGCGCCTACGTGGCGGCGGCCAACCGTGCTCAGGTAGCGGTCAACGAATACCGCGACGCGCCGGTGA
TCGAGGAAGCCCTGACCATCATGGTGAAATCATACGATGCACTGGGCCTGACCGATCTGCGCGACGATACAGAACGCGTG
CTGAAAGCGAATTTCCCGAACAGCGCATTTTTCAAGGGCACAGTGGCGCAAAGCGGCCCGTGGTGGAAAATCTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(33-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8N6P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.94

100

0.483
  comL Neisseria gonorrhoeae MS11

47.191

100

0.475

Multiple sequence alignment