Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   FDQ49_RS12795 Genome accession   NZ_CP040105
Coordinates   2697108..2697491 (+) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2692108..2702491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS12785 (FDQ49_12785) - 2695009..2696127 (-) 1119 WP_022575700.1 efflux RND transporter periplasmic adaptor subunit -
  FDQ49_RS12790 (FDQ49_12790) - 2696187..2696825 (-) 639 WP_002051486.1 hypothetical protein -
  FDQ49_RS12795 (FDQ49_12795) pilG 2697108..2697491 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  FDQ49_RS12800 (FDQ49_12800) - 2697518..2697880 (+) 363 WP_002051151.1 PleD family two-component system response regulator -
  FDQ49_RS12805 (FDQ49_12805) - 2697938..2698474 (+) 537 WP_004885375.1 chemotaxis protein CheW -
  FDQ49_RS12810 (FDQ49_12810) - 2698521..2700602 (+) 2082 WP_022575701.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=362248 FDQ49_RS12795 WP_000389061.1 2697108..2697491(+) (pilG) [Acinetobacter nosocomialis M2]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=362248 FDQ49_RS12795 WP_000389061.1 2697108..2697491(+) (pilG) [Acinetobacter nosocomialis M2]
ATGGAAGATGCGTTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACAGCAGAAACATTATT
GCAACGTGAAGGTTGTGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TCGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTCTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTCTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCATTTAGCAAAGATGAATTGTTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37

Multiple sequence alignment