Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FDQ49_RS06705 Genome accession   NZ_CP040105
Coordinates   1429873..1430283 (-) Length   136 a.a.
NCBI ID   WP_006581368.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1424873..1435283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS06675 (FDQ49_06675) - 1424958..1425227 (-) 270 WP_021510640.1 HPr family phosphocarrier protein -
  FDQ49_RS06680 (FDQ49_06680) rapZ 1425224..1426075 (-) 852 WP_022575759.1 RNase adapter RapZ -
  FDQ49_RS06685 (FDQ49_06685) panC 1426098..1426946 (-) 849 WP_002054580.1 pantoate--beta-alanine ligase -
  FDQ49_RS06690 (FDQ49_06690) panB 1426950..1427759 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  FDQ49_RS06695 (FDQ49_06695) folK 1427805..1428287 (-) 483 WP_006581366.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  FDQ49_RS06700 (FDQ49_06700) pcnB 1428284..1429747 (-) 1464 WP_006581367.1 polynucleotide adenylyltransferase PcnB -
  FDQ49_RS06705 (FDQ49_06705) comEA 1429873..1430283 (-) 411 WP_006581368.1 ComEA family DNA-binding protein Machinery gene
  FDQ49_RS06710 (FDQ49_06710) mazG 1430252..1431058 (-) 807 WP_022575760.1 nucleoside triphosphate pyrophosphohydrolase -
  FDQ49_RS06715 (FDQ49_06715) - 1431171..1431944 (+) 774 WP_002054535.1 SDR family oxidoreductase -
  FDQ49_RS06720 (FDQ49_06720) - 1431987..1434293 (-) 2307 WP_002054537.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15567.91 Da        Isoelectric Point: 10.4054

>NTDB_id=362216 FDQ49_RS06705 WP_006581368.1 1429873..1430283(-) (comEA) [Acinetobacter nosocomialis M2]
MRYSMRLWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKSSHSYGSKISQTNSLNDSTAQIHLNQ
ATVNEFRQLKGIGEKKAQAIVEYRQKNGGFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=362216 FDQ49_RS06705 WP_006581368.1 1429873..1430283(-) (comEA) [Acinetobacter nosocomialis M2]
ATGCGATACAGCATGAGACTTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGTGTGATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAGAATTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGTCTTCTCATTCTTATGGTTCTAAAATTTCTCAAACGAACAGTTTAAATGATTCTACTGCGCAAATTCATTTAAATCAG
GCTACTGTAAATGAGTTTCGGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTGGAATACAGGCAAAAGAA
TGGTGGTTTTAAAAATATTGATGAAATTAAAAACGTCAAAGGAATCGGACCCGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

86.765

100

0.868
  comEA Acinetobacter baumannii D1279779

86.765

100

0.868
  comEA Acinetobacter baylyi ADP1

47.273

80.882

0.382

Multiple sequence alignment