Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   FDV79_RS06035 Genome accession   NZ_CP040103
Coordinates   1273067..1275325 (+) Length   752 a.a.
NCBI ID   WP_140380148.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1268067..1280325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS06010 (FDV79_06480) - 1268354..1268923 (-) 570 WP_005488461.1 PilZ domain-containing protein -
  FDV79_RS06015 (FDV79_06485) lolC 1269188..1270396 (+) 1209 WP_178978896.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  FDV79_RS06020 (FDV79_06490) lolD 1270389..1271096 (+) 708 WP_140380150.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  FDV79_RS06025 (FDV79_06495) lolE 1271099..1272343 (+) 1245 WP_021449343.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  FDV79_RS06030 (FDV79_06500) - 1272549..1273058 (-) 510 WP_005456245.1 DUF2062 domain-containing protein -
  FDV79_RS06035 (FDV79_06505) comEC 1273067..1275325 (+) 2259 WP_140380148.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FDV79_RS06040 (FDV79_06510) msbA 1275357..1277105 (+) 1749 WP_015296464.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  FDV79_RS06045 (FDV79_06515) lpxK 1277111..1278118 (+) 1008 WP_140380146.1 tetraacyldisaccharide 4'-kinase -
  FDV79_RS06050 (FDV79_06520) - 1278099..1278278 (+) 180 WP_005378451.1 Trm112 family protein -
  FDV79_RS06055 (FDV79_06525) kdsB 1278278..1279033 (+) 756 WP_140380144.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84819.41 Da        Isoelectric Point: 9.6555

>NTDB_id=362177 FDV79_RS06035 WP_140380148.1 1273067..1275325(+) (comEC) [Vibrio parahaemolyticus strain LVP66]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIAGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVVAIKQVNTHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GSGVVARAVVTKDSHWVIRTSSSWRESIIQTVERDISRLEHFALIKALAFADRTGLTKEDWQFLRDSGLLHLVSISGLHI
GMALTFGLALGGLIRLAMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYLALKYWLVHWSPWRVLLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVQDSKEGRLGKLRILLLTQLILSLLIVPISGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWYLLDVFLVPLSWSVRYAIGTWQPISAEWTFVIAVVSVVLVLRHVMPRYVWMFVC
VIVVMTGLFPKQYNQTWRIDVLDVGHGLAVLVEKEGRVLLYDTGKAWKNGSIAEQVITPVLHRRGYSSVDTMILSHADND
HAGGRKVIEQYFSPKHKLSSQSFLHYQPCIAAEKWKWQGLNMEVLWPPKPVVRAYNPHSCVISLEDPSTGFKMLFTGDIE
AISEWILLREPEKLRSDVMLVPHHGSKTSSNPKFINVVEPSLAIASTAKLNQWGMPAPEVVQTYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=362177 FDV79_RS06035 WP_140380148.1 1273067..1275325(+) (comEC) [Vibrio parahaemolyticus strain LVP66]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCATGGATATGAAGGTGTCGTAGCGATAAAACA
AGTGAATACTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGTTTCGACGCAGAAAAGCAATCAATG
GGAAGTGGTGTTGTTGCAAGAGCGGTCGTAACTAAAGATTCACACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAGTC
GATTATTCAAACTGTTGAGCGTGATATTTCTCGCCTTGAGCACTTTGCTCTAATTAAAGCACTGGCTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTTTCTGCGTGACAGCGGATTACTGCATCTTGTATCGATTTCTGGTTTACACATT
GGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGCTATGCCGCGATATTGGTTTCTGCCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATCTTGCTTTGAAGTATTGGCTTGTTCATTGGAGTCCATGGCGCGTACTGTTATTGGCTGTGGCGTTGCAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCGGTTAA
CACAGTGCAAGACTCGAAGGAAGGTCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATACTGAGCTTATTGA
TTGTTCCGATCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTAGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATCGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTA
TTTGCTTGACGTATTCCTTGTGCCACTAAGTTGGTCGGTTCGATATGCCATAGGAACTTGGCAACCCATTAGTGCCGAGT
GGACATTTGTTATTGCTGTAGTGAGTGTCGTGCTCGTTTTAAGACATGTTATGCCTCGTTATGTTTGGATGTTTGTCTGT
GTAATTGTTGTGATGACCGGGTTGTTTCCTAAGCAATATAACCAAACTTGGCGTATTGATGTACTTGATGTCGGGCATGG
GTTGGCGGTACTGGTTGAAAAAGAGGGGAGAGTTTTACTCTATGATACGGGCAAGGCTTGGAAAAACGGCAGTATAGCTG
AGCAAGTGATTACGCCAGTACTGCACCGTAGAGGTTACTCAAGTGTCGATACGATGATTTTAAGTCATGCCGATAATGAC
CATGCTGGCGGCCGAAAAGTGATAGAACAGTACTTTTCACCTAAACACAAACTAAGCAGCCAGAGCTTTTTACATTATCA
GCCTTGTATTGCTGCTGAGAAATGGAAGTGGCAAGGGTTGAACATGGAGGTACTTTGGCCTCCTAAACCTGTTGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTACAGGTTTTAAAATGTTGTTTACTGGTGATATCGAA
GCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGCTAGTGCCGCATCATGGAAGCAA
AACCTCTTCTAACCCTAAGTTTATCAATGTTGTTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCCGCACCTGAAGTCGTTCAGACCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGTGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

98.404

100

0.984
  comEC Vibrio campbellii strain DS40M4

66.489

100

0.665
  comEC Vibrio cholerae strain A1552

41.612

100

0.419

Multiple sequence alignment