Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FDV78_RS02170 Genome accession   NZ_CP040101
Coordinates   454899..455531 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio parahaemolyticus strain LVP2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 449899..460531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV78_RS02155 (FDV78_02375) astA 451199..452218 (+) 1020 WP_029826539.1 arginine N-succinyltransferase -
  FDV78_RS02160 (FDV78_02380) astD 452247..453704 (+) 1458 WP_005480036.1 succinylglutamate-semialdehyde dehydrogenase -
  FDV78_RS02165 (FDV78_02385) - 453951..454742 (+) 792 WP_069540548.1 DUF1338 domain-containing protein -
  FDV78_RS02170 (FDV78_02390) crp 454899..455531 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  FDV78_RS02175 (FDV78_02395) - 455772..456641 (-) 870 WP_005458134.1 phosphoribulokinase -
  FDV78_RS02180 (FDV78_02400) - 456767..456979 (-) 213 WP_179000405.1 YheU family protein -
  FDV78_RS02185 (FDV78_02405) - 457013..458020 (-) 1008 WP_179000406.1 hydrolase -
  FDV78_RS02190 (FDV78_02410) - 458107..458595 (-) 489 WP_005458139.1 TIGR02444 family protein -
  FDV78_RS02195 (FDV78_02415) - 458592..460511 (-) 1920 WP_021449774.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=362124 FDV78_RS02170 WP_005381432.1 454899..455531(-) (crp) [Vibrio parahaemolyticus strain LVP2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=362124 FDV78_RS02170 WP_005381432.1 454899..455531(-) (crp) [Vibrio parahaemolyticus strain LVP2]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCAGGTGAAAAAGCTGAAACGTTGTACTACATCGTTAAAGGCTCTGTTGCGGTTCTTATCAAGG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTTATTGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCTAAACAACCAGATGCGATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCGCACGGTAAAACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment