Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   E3S93_RS04170 Genome accession   NZ_CP047789
Coordinates   834825..836885 (-) Length   686 a.a.
NCBI ID   WP_160177717.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_967     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 829825..841885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S93_RS04140 (E3S93_04140) rnc 830090..830821 (-) 732 WP_000043237.1 ribonuclease III -
  E3S93_RS04145 (E3S93_04145) - 830937..831170 (-) 234 WP_000426914.1 acyl carrier protein -
  E3S93_RS04150 (E3S93_04150) fabG 831413..832147 (-) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  E3S93_RS04155 (E3S93_04155) fabD 832140..833066 (-) 927 WP_000047348.1 ACP S-malonyltransferase -
  E3S93_RS04160 (E3S93_04160) plsX 833059..834045 (-) 987 WP_000239744.1 phosphate acyltransferase PlsX -
  E3S93_RS04165 (E3S93_04165) fapR 834050..834622 (-) 573 WP_001548538.1 transcription factor FapR -
  E3S93_RS04170 (E3S93_04170) recG 834825..836885 (-) 2061 WP_160177717.1 ATP-dependent DNA helicase RecG Machinery gene
  E3S93_RS04175 (E3S93_04175) fakA 837075..838721 (-) 1647 WP_000623903.1 fatty acid kinase catalytic subunit FakA -
  E3S93_RS04180 (E3S93_04180) - 838736..839110 (-) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  E3S93_RS04185 (E3S93_04185) rpmB 839553..839741 (+) 189 WP_000517908.1 50S ribosomal protein L28 -
  E3S93_RS04190 (E3S93_04190) - 840122..840763 (-) 642 WP_000547905.1 thiamine diphosphokinase -
  E3S93_RS04195 (E3S93_04195) rpe 840770..841414 (-) 645 WP_000164332.1 ribulose-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78328.84 Da        Isoelectric Point: 6.1557

>NTDB_id=362116 E3S93_RS04170 WP_160177717.1 834825..836885(-) (recG) [Staphylococcus aureus strain UP_967]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEG
IKQNQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDIDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=362116 E3S93_RS04170 WP_160177717.1 834825..836885(-) (recG) [Staphylococcus aureus strain UP_967]
TTGGCTAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACTAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTAGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACCGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGGACACAAACTCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAATCAAATACGAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACATTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACATAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTAGTTGCTGCAATTTGTATGTATGCGTTAAAAACTGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCTTTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACGCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTAATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTATCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGTAATCATG
AGATAAATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(267-422)

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

RecG wedge domain (RecG_wedge)

(16-175)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

52.924

97.23

0.515
  recG/mmsA Streptococcus pneumoniae R6

50.233

94.023

0.472
  recG/mmsA Streptococcus pneumoniae R36A

50.233

94.023

0.472
  recG Neisseria meningitidis strain C311

39.97

97.376

0.389