Detailed information NTG0362093

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FDP11_RS10665
• Genome accession: NZ_CP040100
• Coordinates: 525852..526721 (-)
• Length: 289 a.a.
• NCBI ID: WP_178981806.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain LVP1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 520852..531721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDP11_RS10630 (FDP11_11425)	rpsP	521806..522054 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
FDP11_RS10635 (FDP11_11430)	rimM	522083..522631 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
FDP11_RS10640 (FDP11_11435)	trmD	522659..523402 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FDP11_RS10645 (FDP11_11440)	rplS	523444..523797 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
FDP11_RS10650 (FDP11_11445)	yacG	524206..524400 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
FDP11_RS10655 (FDP11_11450)	zapD	524469..525209 (-)	741	WP_023624252.1	cell division protein ZapD	-
FDP11_RS10660 (FDP11_11455)	coaE	525237..525851 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
FDP11_RS10665 (FDP11_11460)	pilD	525852..526721 (-)	870	WP_178981806.1	A24 family peptidase	Machinery gene
FDP11_RS10670 (FDP11_11465)	pilC	526786..528009 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
FDP11_RS10675 (FDP11_11470)	pilB	528033..529718 (-)	1686	WP_178981808.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FDP11_RS10680 (FDP11_11475)	pilA	529724..530143 (-)	420	WP_025442238.1	pilin	Machinery gene
FDP11_RS10685 (FDP11_11480)	nadC	530407..531294 (-)	888	WP_025442237.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32403.51 Da
• Isoelectric Point: 7.1223

>NTDB_id=362093 FDP11_RS10665 WP_178981806.1 525852..526721(-) (pilD) [Vibrio parahaemolyticus strain LVP1]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHYCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=362093 FDP11_RS10665 WP_178981806.1 525852..526721(-) (pilD) [Vibrio parahaemolyticus strain LVP1]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATTATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTATGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.619	100	0.896
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446