Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FDP11_RS10680 | Genome accession | NZ_CP040100 |
| Coordinates | 529724..530143 (-) | Length | 139 a.a. |
| NCBI ID | WP_025442238.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain LVP1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 524724..535143
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDP11_RS10660 (FDP11_11455) | coaE | 525237..525851 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| FDP11_RS10665 (FDP11_11460) | pilD | 525852..526721 (-) | 870 | WP_178981806.1 | A24 family peptidase | Machinery gene |
| FDP11_RS10670 (FDP11_11465) | pilC | 526786..528009 (-) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| FDP11_RS10675 (FDP11_11470) | pilB | 528033..529718 (-) | 1686 | WP_178981808.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FDP11_RS10680 (FDP11_11475) | pilA | 529724..530143 (-) | 420 | WP_025442238.1 | pilin | Machinery gene |
| FDP11_RS10685 (FDP11_11480) | nadC | 530407..531294 (-) | 888 | WP_025442237.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FDP11_RS10690 (FDP11_11485) | ampD | 531387..531938 (+) | 552 | WP_005462574.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FDP11_RS10695 (FDP11_11490) | pdhR | 532344..533111 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14239.23 Da Isoelectric Point: 4.9630
>NTDB_id=362096 FDP11_RS10680 WP_025442238.1 529724..530143(-) (pilA) [Vibrio parahaemolyticus strain LVP1]
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVANLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVANLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
Nucleotide
Download Length: 420 bp
>NTDB_id=362096 FDP11_RS10680 WP_025442238.1 529724..530143(-) (pilA) [Vibrio parahaemolyticus strain LVP1]
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAATTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAATTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
70.29 |
99.281 |
0.698 |
| pilA | Pseudomonas aeruginosa PAK |
47.761 |
96.403 |
0.46 |
| pilA/pilA1 | Eikenella corrodens VA1 |
42.143 |
100 |
0.424 |
| pilA | Acinetobacter baumannii strain A118 |
41.86 |
92.806 |
0.388 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae strain A1552 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae C6706 |
39.259 |
97.122 |
0.381 |
| pilA2 | Legionella pneumophila str. Paris |
43.089 |
88.489 |
0.381 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.276 |
88.489 |
0.374 |