Detailed information NTG0361937

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FDM99_RS18705
• Genome accession: NZ_CP040080
• Coordinates: 863207..864067 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain SP304
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 858207..869067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDM99_RS04215 (FDM99_04215)	-	859098..860408 (+)	1311	WP_032026982.1	tetratricopeptide repeat protein	-
FDM99_RS04220 (FDM99_04220)	-	860485..860811 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
FDM99_RS04225 (FDM99_04225)	rlmB	860913..861662 (+)	750	WP_137344814.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
FDM99_RS04230 (FDM99_04230)	-	861698..862612 (+)	915	WP_000075011.1	DMT family transporter	-
FDM99_RS04235 (FDM99_04235)	coaE	862609..863205 (-)	597	WP_032026983.1	dephospho-CoA kinase	-
FDM99_RS18705 (FDM99_04240)	pilD	863207..864067 (-)	861	WP_001152273.1	prepilin peptidase	Machinery gene
FDM99_RS04245 (FDM99_04245)	pilC	864067..865293 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
FDM99_RS04250 (FDM99_04250)	pilB	865323..867035 (-)	1713	WP_032026985.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FDM99_RS04255 (FDM99_04255)	tpiA	867326..868120 (+)	795	WP_032026986.1	triose-phosphate isomerase	-
FDM99_RS04260 (FDM99_04260)	secG	868133..868462 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=361937 FDM99_RS18705 WP_001152273.1 863207..864067(-) (pilD) [Acinetobacter baumannii strain SP304]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=361937 FDM99_RS18705 WP_001152273.1 863207..864067(-) (pilD) [Acinetobacter baumannii strain SP304]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCACTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441