Detailed information NTG0361903

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: FDM99_RS01015
• Genome accession: NZ_CP040080
• Coordinates: 189790..190212 (-)
• Length: 140 a.a.
• NCBI ID: WP_024433097.1
• Uniprot ID: A0AAP1W5M5
• Organism: Acinetobacter baumannii strain SP304
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 184790..195212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDM99_RS00985 (FDM99_00985)	-	185318..186352 (+)	1035	WP_032008730.1	lipase secretion chaperone	-
FDM99_RS00990 (FDM99_00990)	-	186467..187408 (+)	942	WP_085916958.1	lipase family alpha/beta hydrolase	-
FDM99_RS00995 (FDM99_00995)	rplS	187461..187829 (-)	369	WP_000014562.1	50S ribosomal protein L19	-
FDM99_RS01000 (FDM99_01000)	trmD	188037..188777 (-)	741	WP_000464599.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FDM99_RS01005 (FDM99_01005)	rimM	188823..189371 (-)	549	WP_000189236.1	ribosome maturation factor RimM	-
FDM99_RS01010 (FDM99_01010)	rpsP	189391..189642 (-)	252	WP_000260334.1	30S ribosomal protein S16	-
FDM99_RS01015 (FDM99_01015)	comF	189790..190212 (-)	423	WP_024433097.1	type IV pilin protein	Machinery gene
FDM99_RS01020 (FDM99_01020)	-	190212..190775 (-)	564	WP_024436448.1	type IV pilin protein	-
FDM99_RS01025 (FDM99_01025)	-	190785..194891 (-)	4107	WP_137344711.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 140 a.a.
• Molecular weight: 15517.59 Da
• Isoelectric Point: 9.2459

>NTDB_id=361903 FDM99_RS01015 WP_024433097.1 189790..190212(-) (comF) [Acinetobacter baumannii strain SP304]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRADVQSEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPKTNTIQAGNGTVLLNSDGQKCWTKGQSCTTSTTSNWDGK

Nucleotide

• Length: 423 bp

>NTDB_id=361903 FDM99_RS01015 WP_024433097.1 189790..190212(-) (comF) [Acinetobacter baumannii strain SP304]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAATATAAAATTCGGACGAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTAAAACAAATACGATTCA
AGCTGGAAATGGGACTGTACTTTTGAATAGTGACGGGCAGAAATGTTGGACTAAAGGTCAGTCTTGTACAACTTCAACCA
CTTCCAATTGGGATGGCAAGTAA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (28-107)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	54.167	100	0.557
pilE	Acinetobacter baumannii D1279779	52.941	97.143	0.514
pilA2	Legionella pneumophila str. Paris	39.416	97.857	0.386
pilA2	Legionella pneumophila strain ERS1305867	39.416	97.857	0.386