Detailed information NTG0361836

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FDF20_RS21380
• Genome accession: NZ_CP040050
• Coordinates: 90232..91092 (-)
• Length: 286 a.a.
• NCBI ID: WP_045544616.1
• Uniprot ID: A0A1S2G4K1
• Organism: Acinetobacter baumannii strain VB16141
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 85232..96092

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDF20_RS00435 (FDF20_00435)	-	86123..87433 (+)	1311	WP_045544617.1	tetratricopeptide repeat protein	-
FDF20_RS00440 (FDF20_00440)	-	87510..87836 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
FDF20_RS00445 (FDF20_00445)	rlmB	87938..88687 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
FDF20_RS00450 (FDF20_00450)	-	88723..89637 (+)	915	WP_000075014.1	DMT family transporter	-
FDF20_RS00455 (FDF20_00455)	coaE	89634..90230 (-)	597	WP_000874127.1	dephospho-CoA kinase	-
FDF20_RS21380 (FDF20_00460)	pilD	90232..91092 (-)	861	WP_045544616.1	prepilin peptidase	Machinery gene
FDF20_RS00465 (FDF20_00465)	pilC	91092..92318 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
FDF20_RS00470 (FDF20_00470)	pilB	92348..94060 (-)	1713	WP_045544615.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FDF20_RS00475 (FDF20_00475)	tpiA	94351..95145 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
FDF20_RS00480 (FDF20_00480)	secG	95158..95487 (+)	330	WP_045544614.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32102.55 Da
• Isoelectric Point: 7.1041

>NTDB_id=361836 FDF20_RS21380 WP_045544616.1 90232..91092(-) (pilD) [Acinetobacter baumannii strain VB16141]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIIYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=361836 FDF20_RS21380 WP_045544616.1 90232..91092(-) (pilD) [Acinetobacter baumannii strain VB16141]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTATCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A1S2G4K1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	54.412	95.105	0.517
pilD	Vibrio campbellii strain DS40M4	52.555	95.804	0.503
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441